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Yeo, Gene W
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: WIE-ZYW, 2022, p.12643-12643
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Yeo, Gene W
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: WIL-ZYW, 2021, p.12610-12610
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ArticlesPeer ReviewedFull Text
Short poly(A) tails are a conserved feature of highly expressed genes
Author / Creator:Lima, Sarah Azoubel ; Chipman, Laura B ; Nicholson, Angela L ; Chen, Ying-Hsin ; Yee, Brian A ; Yeo, Gene W ; Coller, Jeff ; Pasquinelli, Amy E
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2017-12, Vol.24 (12), p.1057-1063
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NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing
Author / Creator:Jiang, Li ; Shao, Changwei ; Wu, Qi-Jia ; Chen, Geng ; Zhou, Jie ; Yang, Bo ; Li, Hairi ; Gou, Lan-Tao ; Zhang, Yi ; Wang, Yangming ; Yeo, Gene W ; Zhou, Yu ; Fu, Xiang-Dong
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2017-10, Vol.24 (10), p.816-824
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ArticlesPeer ReviewedFull Text
Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes
Author / Creator:Brannan, Kristopher W. ; Chaim, Isaac A. ; Marina, Ryan J. ; Yee, Brian A. ; Kofman, Eric R. ; Lorenz, Daniel A. ; Jagannatha, Pratibha ; Dong, Kevin D. ; Madrigal, Assael A. ; Underwood, Jason G. ; Yeo, Gene W.
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-05, Vol.18 (5), p.507-519
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ArticlesPeer ReviewedFull Text
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins
Author / Creator:Van Nostrand, Eric L. ; Pratt, Gabriel A. ; Yee, Brian A. ; Wheeler, Emily C. ; Blue, Steven M. ; Mueller, Jasmine ; Park, Samuel S. ; Garcia, Keri E. ; Gelboin-Burkhart, Chelsea ; Nguyen, Thai B. ; Rabano, Ines ; Stanton, Rebecca ; Sundararaman, Balaji ; Wang, Ruth ; Fu, Xiang-Dong ; Graveley, Brenton R. ; Yeo, Gene W.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2020-04, Vol.21 (1), p.90-90, Article 90
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ArticlesPeer ReviewedFull Text
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death
Author / Creator:Arif, Waqar ; Mathur, Bhoomika ; Saikali, Michael F. ; Chembazhi, Ullas V. ; Toohill, Katelyn ; Song, You Jin ; Hao, Qinyu ; Karimi, Saman ; Blue, Steven M. ; Yee, Brian A. ; Van Nostrand, Eric L. ; Bangru, Sushant ; Guzman, Grace ; Yeo, Gene W. ; Prasanth, Kannanganattu V. ; Anakk, Sayeepriyadarshini ; Cummins, Carolyn L. ; Kalsotra, Auinash
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-02, Vol.14 (1), p.551-551, Article 551
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Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43
Author / Creator:Polymenidou, Magdalini ; Lagier-Tourenne, Clotilde ; Hutt, Kasey R ; Huelga, Stephanie C ; Moran, Jacqueline ; Liang, Tiffany Y ; Ling, Shuo-Chien ; Sun, Eveline ; Wancewicz, Edward ; Mazur, Curt ; Kordasiewicz, Holly ; Sedaghat, Yalda ; Donohue, John Paul ; Shiue, Lily ; Bennett, C Frank ; Yeo, Gene W ; Cleveland, Don W
Publisher:New York: Nature Publishing Group US
Journal title:Nature neuroscience, 2011-04, Vol.14 (4), p.459-468
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Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
Author / Creator:Okholm, Trine Line Hauge ; Sathe, Shashank ; Park, Samuel S. ; Kamstrup, Andreas Bjerregaard ; Rasmussen, Asta Mannstaedt ; Shankar, Archana ; Chua, Zong Ming ; Fristrup, Niels ; Nielsen, Morten Muhlig ; Vang, Søren ; Dyrskjøt, Lars ; Aigner, Stefan ; Damgaard, Christian Kroun ; Yeo, Gene W. ; Pedersen, Jakob Skou
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2020-12, Vol.12 (1), p.112-22, Article 112
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Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
Author / Creator:Lovci, Michael T ; Ghanem, Dana ; Marr, Henry ; Arnold, Justin ; Gee, Sherry ; Parra, Marilyn ; Liang, Tiffany Y ; Stark, Thomas J ; Gehman, Lauren T ; Hoon, Shawn ; Massirer, Katlin B ; Pratt, Gabriel A ; Black, Douglas L ; Gray, Joe W ; Conboy, John G ; Yeo, Gene W
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2013-12, Vol.20 (12), p.1434-1442
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ArticlesPeer ReviewedFull Text
Transcriptional Signature and Memory Retention of Human-Induced Pluripotent Stem Cells
Author / Creator:Marchetto, Maria C. N. ; Yeo, Gene W. ; Kainohana, Osamu ; Marsala, Martin ; Gage, Fred H. ; Muotri, Alysson R.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2009-09, Vol.4 (9), p.e7076-e7076
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FLARE: a fast and flexible workflow for identifying RNA editing foci
Author / Creator:Kofman, Eric ; Yee, Brian ; Medina-Munoz, Hugo C. ; Yeo, Gene W.
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2023-10, Vol.24 (1), p.370-370, Article 370
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Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration
Author / Creator:Lagier-Tourenne, Clotilde ; Baughn, Michael ; Rigo, Frank ; Sun, Shuying ; Liu, Patrick ; Li, Hai-Ri ; Jiang, Jie ; Watt, Andrew T. ; Chun, Seung ; Katz, Melanie ; Qiu, Jinsong ; Sun, Ying ; Ling, Shuo-Chien ; Zhu, Qiang ; Polymenidou, Magdalini ; Drenner, Kevin ; Artates, Jonathan W. ; McAlonis-Downes, Melissa ; Markmiller, Sebastian ; Hutt, Kasey R. ; Pizzo, Donald P. ; Cady, Janet ; Harms, Matthew B. ; Baloh, Robert H. ; Vandenberg, Scott R. ; Yeo, Gene W. ; Fu, Xiang-Dong ; Bennett, C. Frank ; Cleveland, Don W. ; Ravits, John
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-11, Vol.110 (47), p.E4530-E4539
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Divergent Transcription from Active Promoters
Author / Creator:Seila, Amy C ; Calabrese, J. Mauro ; Levine, Stuart S ; Yeo, Gene W ; Rahl, Peter B ; Flynn, Ryan A ; Young, Richard A ; Sharp, Phillip A
Publisher:Washington, DC: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2008-12, Vol.322 (5909), p.1849-1851
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ALS-linked TDP-43 mutations produce aberrant RNA splicing and adult-onset motor neuron disease without aggregation or loss of nuclear TDP-43
Author / Creator:Arnold, Eveline S. ; Ling, Shuo-Chien ; Huelga, Stephanie C. ; Lagier-Tourenne, Clotilde ; Polymenidou, Magdalini ; Ditsworth, Dara ; Kordasiewicz, Holly B. ; McAlonis-Downes, Melissa ; Platoshyn, Oleksandr ; Parone, Philippe A. ; Da Cruz, Sandrine ; Clutario, Kevin M. ; Swing, Debbie ; Tessarollo, Lino ; Marsala, Martin ; Shaw, Christopher E. ; Yeo, Gene W. ; Cleveland, Don W.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-02, Vol.110 (8), p.E736-E745
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An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
Author / Creator:Yeo, Gene W ; Coufal, Nicole G ; Liang, Tiffany Y ; Peng, Grace E ; Fu, Xiang-Dong ; Gage, Fred H
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2009-02, Vol.16 (2), p.130-137
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L1 retrotransposition in human neural progenitor cells
Author / Creator:Coufal, Nicole G. ; Garcia-Perez, José L. ; Peng, Grace E. ; Yeo, Gene W. ; Mu, Yangling ; Lovci, Michael T. ; Morell, Maria ; O’Shea, K. Sue ; Moran, John V. ; Gage, Fred H.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2009-08, Vol.460 (7259), p.1127-1131
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Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses
Author / Creator:Kapeli, Katannya ; Pratt, Gabriel A. ; Vu, Anthony Q. ; Hutt, Kasey R. ; Martinez, Fernando J. ; Sundararaman, Balaji ; Batra, Ranjan ; Freese, Peter ; Lambert, Nicole J. ; Huelga, Stephanie C. ; Chun, Seung J. ; Liang, Tiffany Y. ; Chang, Jeremy ; Donohue, John P. ; Shiue, Lily ; Zhang, Jiayu ; Zhu, Haining ; Cambi, Franca ; Kasarskis, Edward ; Hoon, Shawn ; Ares Jr, Manuel ; Burge, Christopher B. ; Ravits, John ; Rigo, Frank ; Yeo, Gene W.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-07, Vol.7 (1), p.12143-12143, Article 12143
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High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues
Author / Creator:Liang, Qishan ; Yu, Tao ; Kofman, Eric ; Jagannatha, Pratibha ; Rhine, Kevin ; Yee, Brian A. ; Corbett, Kevin D. ; Yeo, Gene W.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-08, Vol.15 (1), p.7067-16, Article 7067
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ePRINT: exonuclease assisted mapping of protein-RNA interactions
Author / Creator:Hawkins, Sophie ; Mondaini, Alexandre ; Namboori, Seema C. ; Nguyen, Grady G. ; Yeo, Gene W. ; Javed, Asif ; Bhinge, Akshay
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-05, Vol.25 (1), p.140-140, Article 140
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Yeo, Gene W

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Yeo, Gene W

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Short poly(A) tails are a conserved feature of highly expressed genes

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NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing

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Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes

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Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

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Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death

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Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43

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Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

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Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges

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Transcriptional Signature and Memory Retention of Human-Induced Pluripotent Stem Cells

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FLARE: a fast and flexible workflow for identifying RNA editing foci

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Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration

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Divergent Transcription from Active Promoters

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ALS-linked TDP-43 mutations produce aberrant RNA splicing and adult-onset motor neuron disease without aggregation or loss of nuclear TDP-43

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An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

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L1 retrotransposition in human neural progenitor cells

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Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses

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High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues

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ePRINT: exonuclease assisted mapping of protein-RNA interactions

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