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ArticlesPeer ReviewedFull Text
Dereplication of microbial metabolites through database search of mass spectra
Author / Creator:Mohimani, Hosein ; Gurevich, Alexey ; Shlemov, Alexander ; Mikheenko, Alla ; Korobeynikov, Anton ; Cao, Liu ; Shcherbin, Egor ; Nothias, Louis-Felix ; Dorrestein, Pieter C. ; Pevzner, Pavel A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-10, Vol.9 (1), p.4035-12, Article 4035
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Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
Author / Creator:Sieber, Christian M. K. ; Probst, Alexander J. ; Sharrar, Allison ; Thomas, Brian C. ; Hess, Matthias ; Tringe, Susannah G. ; Banfield, Jillian F.
Publisher:London: Nature Publishing Group UK
Journal title:Nature microbiology, 2018-07, Vol.3 (7), p.836-843
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ArticlesPeer ReviewedFull Text
Dereplication of peptidic natural products through database search of mass spectra
Author / Creator:Mohimani, Hosein ; Gurevich, Alexey ; Mikheenko, Alla ; Garg, Neha ; Nothias, Louis-Felix ; Ninomiya, Akihiro ; Takada, Kentaro ; Dorrestein, Pieter C ; Pevzner, Pavel A
Publisher:New York: Nature Publishing Group US
Journal title:Nature chemical biology, 2017-01, Vol.13 (1), p.30-37
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Dereplication strategies in natural product research: How many tools and methodologies behind the same concept?
Author / Creator:Hubert, Jane ; Nuzillard, Jean-Marc ; Renault, Jean-Hugues
Publisher:Dordrecht: Springer Netherlands
Journal title:Phytochemistry reviews, 2017-02, Vol.16 (1), p.55-95
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Dereplication of Natural Product Antifungals via Liquid Chromatography-Tandem Mass Spectrometry and Chemical Genomics
Author / Creator:Brittin, Nathaniel J ; Aceti, David J ; Braun, Doug R ; Anderson, Josephine M ; Ericksen, Spencer S ; Rajski, Scott R ; Currie, Cameron R ; Andes, David R ; Bugni, Tim S
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2024-12, Vol.30 (1), p.77
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Aggressive dereplication using UHPLC–DAD–QTOF: screening extracts for up to 3000 fungal secondary metabolites
Author / Creator:Klitgaard, Andreas ; Iversen, Anita ; Andersen, Mikael R. ; Larsen, Thomas O. ; Frisvad, Jens Christian ; Nielsen, Kristian Fog
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Analytical and bioanalytical chemistry, 2014-03, Vol.406 (7), p.1933-1943
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Dereplication strategies for targeted isolation of new antitrypanosomal actinosporins A and B from a marine sponge associated-Actinokineospora sp. EG49
Author / Creator:Abdelmohsen, Usama Ramadan ; Cheng, Cheng ; Viegelmann, Christina ; Zhang, Tong ; Grkovic, Tanja ; Ahmed, Safwat ; Quinn, Ronald J ; Hentschel, Ute ; Edrada-Ebel, RuAngelie
Publisher:Switzerland: MDPI AG
Journal title:Marine drugs, 2014-03, Vol.12 (3), p.1220-1244
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MS/MS-Based Molecular Networking: An Efficient Approach for Natural Products Dereplication
Author / Creator:Qin, Guo-Fei ; Zhang, Xiao ; Zhu, Feng ; Huo, Zong-Qing ; Yao, Qing-Qiang ; Feng, Qun ; Liu, Zhong ; Zhang, Gui-Min ; Yao, Jing-Chun ; Liang, Hong-Bao
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2022-12, Vol.28 (1), p.157
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Dereplication of antimicrobial biosurfactants from marine bacteria using molecular networking
Author / Creator:Patiño, Albert D. ; Montoya-Giraldo, Manuela ; Quintero, Marynes ; López-Parra, Lizbeth L. ; Blandón, Lina M. ; Gómez-León, Javier
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-08, Vol.11 (1), p.16286-12, Article 16286
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ArticlesPeer ReviewedFull Text
Dereplication of New Saponins from Agave bracteosa
Author / Creator:Guzzo, Francesca ; Durán, Alexandra G ; Rostoll, Laura L ; Macías, Francisco A ; Simonet, Ana M
Publisher:Switzerland: MDPI AG
Journal title:Plants (Basel), 2024-09, Vol.13 (18), p.2570
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The Three Pillars of Natural Product Dereplication. Alkaloids from the Bulbs of Urceolina peruviana (C. Presl) J.F. Macbr. as a Preliminary Test Case
Author / Creator:Lianza, Mariacaterina ; Leroy, Ritchy ; Machado Rodrigues, Carine ; Borie, Nicolas ; Sayagh, Charlotte ; Remy, Simon ; Kuhn, Stefan ; Renault, Jean-Hugues ; Nuzillard, Jean-Marc
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2021-01, Vol.26 (3), p.637
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Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
Author / Creator:Gaudêncio, Susana P ; Bayram, Engin ; Lukić Bilela, Lada ; Cueto, Mercedes ; Díaz-Marrero, Ana R ; Haznedaroglu, Berat Z ; Jimenez, Carlos ; Mandalakis, Manolis ; Pereira, Florbela ; Reyes, Fernando ; Tasdemir, Deniz
Publisher:Switzerland: MDPI AG
Journal title:Marine drugs, 2023-05, Vol.21 (5), p.308
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ArticlesPeer ReviewedFull Text
Dereplication of microbial extracts and related analytical technologies
Author / Creator:Ito, Tatsuya ; Masubuchi, Miyako
Publisher:London: Nature Publishing Group UK
Journal title:Journal of antibiotics, 2014-05, Vol.67 (5), p.353-360
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ArticlesPeer ReviewedFull Text
6-Oxofurostane and (iso)Spirostane Types of Saponins in Smilax sieboldii : UHPLC-QToF-MS/MS and GNPS-Molecular Networking Approach for the Rapid Dereplication and Biodistribution of Specialized Metabo...
Author / Creator:Avula, Bharathi ; Bae, Ji-Yeong ; Ahn, Jongmin ; Katragunta, Kumar ; Wang, Yan-Hong ; Wang, Mei ; Kwon, Yongsoo ; Khan, Ikhlas A ; Chittiboyina, Amar G
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2023-07, Vol.24 (14), p.11487
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
Author / Creator:Theobald, Sebastian ; Vesth, Tammi C. ; Rendsvig, Jakob Kræmmer ; Nielsen, Kristian Fog ; Riley, Robert ; de Abreu, Lucas Magalhães ; Salamov, Asaf ; Frisvad, Jens Christian ; Larsen, Thomas Ostenfeld ; Andersen, Mikael Rørdam ; Hoof, Jakob Blæsbjerg
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2018-12, Vol.8 (1), p.17957-12, Article 17957
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Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library
Author / Creator:Kildgaard, Sara ; Mansson, Maria ; Dosen, Ina ; Klitgaard, Andreas ; Frisvad, Jens C ; Larsen, Thomas O ; Nielsen, Kristian F
Publisher:Switzerland: MDPI AG
Journal title:Marine drugs, 2014-06, Vol.12 (6), p.3681-3705
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Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Data
Author / Creator:Dumolin, Charles ; Aerts, Maarten ; Verheyde, Bart ; Schellaert, Simon ; Vandamme, Tim ; Van der Jeugt, Felix ; De Canck, Evelien ; Cnockaert, Margo ; Wieme, Anneleen D ; Cleenwerck, Ilse ; Peiren, Jindrich ; Dawyndt, Peter ; Vandamme, Peter ; Carlier, Aurélien
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2019-10, Vol.4 (5), p.e00437-19
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Chemical Investigation of the Mediterranean Sponge Crambe crambe by UHPLC-HRMS/MS via Manual and Computational Dereplication Approaches
Author / Creator:Vlachou, Pinelopi ; Tsafantakis, Nikolaos ; Milic, Nikola ; Polyzois, Alexandros ; Baira, Eirini ; Termentzi, Aikaterini ; Le Goff, Géraldine ; Ouazzani, Jamal ; Fokialakis, Nikolas
Publisher:Switzerland: MDPI AG
Journal title:Marine drugs, 2024-11, Vol.22 (11), p.522
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Identification and dereplication of endophytic Colletotrichum strains by MALDI TOF mass spectrometry and molecular networking
Author / Creator:Barthélemy, Morgane ; Guérineau, Vincent ; Genta-Jouve, Grégory ; Roy, Mélanie ; Chave, Jérôme ; Guillot, Régis ; Pellissier, Léonie ; Wolfender, Jean-Luc ; Stien, Didier ; Eparvier, Véronique ; Touboul, David
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-11, Vol.10 (1), p.19788-19788, Article 19788
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UHPLC-ESI-QTOF-MS/MS-Based Molecular Networking Guided Isolation and Dereplication of Antibacterial and Antifungal Constituents of Ventilago denticulata
Author / Creator:Azizah, Muhaiminatul ; Pripdeevech, Patcharee ; Thongkongkaew, Tawatchai ; Mahidol, Chulabhorn ; Ruchirawat, Somsak ; Kittakoop, Prasat
Publisher:MDPI
Journal title:Antibiotics (Basel), 2020-09, Vol.9 (9), p.606
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Dereplication of microbial metabolites through database search of mass spectra

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Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

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Dereplication of peptidic natural products through database search of mass spectra

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Dereplication strategies in natural product research: How many tools and methodologies behind the same concept?

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Dereplication of Natural Product Antifungals via Liquid Chromatography-Tandem Mass Spectrometry and Chemical Genomics

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Aggressive dereplication using UHPLC–DAD–QTOF: screening extracts for up to 3000 fungal secondary metabolites

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Dereplication strategies for targeted isolation of new antitrypanosomal actinosporins A and B from a marine sponge associated-Actinokineospora sp. EG49

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MS/MS-Based Molecular Networking: An Efficient Approach for Natural Products Dereplication

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Dereplication of antimicrobial biosurfactants from marine bacteria using molecular networking

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Dereplication of New Saponins from Agave bracteosa

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The Three Pillars of Natural Product Dereplication. Alkaloids from the Bulbs of Urceolina peruviana (C. Presl) J.F. Macbr. as a Preliminary Test Case

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Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation

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Dereplication of microbial extracts and related analytical technologies

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6-Oxofurostane and (iso)Spirostane Types of Saponins in Smilax sieboldii : UHPLC-QToF-MS/MS and GNPS-Molecular Networking Approach for the Rapid Dereplication and Biodistribution of Specialized Metabo...

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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication

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Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library

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Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Data

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Chemical Investigation of the Mediterranean Sponge Crambe crambe by UHPLC-HRMS/MS via Manual and Computational Dereplication Approaches

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Identification and dereplication of endophytic Colletotrichum strains by MALDI TOF mass spectrometry and molecular networking

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UHPLC-ESI-QTOF-MS/MS-Based Molecular Networking Guided Isolation and Dereplication of Antibacterial and Antifungal Constituents of Ventilago denticulata

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