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873 results for Chromatin+loops

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Back-spliced RNA from retrotransposon binds to centromere and regulates centromeric chromatin loops in maize
Author / Creator:Liu, Yalin ; Su, Handong ; Zhang, Jing ; Liu, Yang ; Feng, Chao ; Han, Fangpu
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2020-01, Vol.18 (1), p.e3000582-e3000582
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Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development
Author / Creator:Espinola, Sergio Martin ; Götz, Markus ; Bellec, Maelle ; Messina, Olivier ; Fiche, Jean-Bernard ; Houbron, Christophe ; Dejean, Matthieu ; Reim, Ingolf ; Cardozo Gizzi, Andrés M. ; Lagha, Mounia ; Nollmann, Marcelo
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2021-04, Vol.53 (4), p.477-486
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Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation
Author / Creator:Zhao, Lun ; Wang, Shuangqi ; Cao, Zhilin ; Ouyang, Weizhi ; Zhang, Qing ; Xie, Liang ; Zheng, Ruiqin ; Guo, Minrong ; Ma, Meng ; Hu, Zhe ; Sung, Wing-Kin ; Zhang, Qifa ; Li, Guoliang ; Li, Xingwang
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-08, Vol.10 (1), p.3640-13, Article 3640
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ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL
Author / Creator:Wutz, Gordana ; Ladurner, Rene ; St Hilaire, Brian Glenn ; Stocsits, Roman R ; Nagasaka, Kota ; Pignard, Benoit ; Sanborn, Adrian ; Tang, Wen ; Várnai, Csilla ; Ivanov, Miroslav P ; Schoenfelder, Stefan ; van der Lelij, Petra ; Huang, Xingfan ; Dürnberger, Gerhard ; Roitinger, Elisabeth ; Mechtler, Karl ; Davidson, Iain Finley ; Fraser, Peter ; Lieberman-Aiden, Erez ; Peters, Jan-Michael
Publisher:Cambridge: eLife Sciences Publications Ltd
Journal title:eLife, 2020-02, Vol.9
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Smc3 acetylation, Pds5 and Scc2 control the translocase activity that establishes cohesin-dependent chromatin loops
Author / Creator:Bastié, Nathalie ; Chapard, Christophe ; Dauban, Lise ; Gadal, Olivier ; Beckouët, Frédéric ; Koszul, Romain
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2022-06, Vol.29 (6), p.575-585
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CTCF: the protein, the binding partners, the binding sites and their chromatin loops
Author / Creator:Holwerda, Sjoerd Johannes Bastiaan ; de Laat, Wouter
Publisher:England: The Royal Society
Journal title:Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2013-06, Vol.368 (1620), p.20120369-20120369
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Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions
Author / Creator:Doyle, Boryana ; Fudenberg, Geoffrey ; Imakaev, Maxim ; Mirny, Leonid A.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2014-10, Vol.10 (10), p.e1003867-e1003867
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Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops
Author / Creator:Liu, Shuai ; Cao, Yaqiang ; Cui, Kairong ; Tang, Qingsong ; Zhao, Keji
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-11, Vol.13 (1), p.6679-6679, Article 6679
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DconnLoop: a deep learning model for predicting chromatin loops based on multi-source data integration
Author / Creator:Wang, Junfeng ; Cheng, Kuikui ; Yan, Chaokun ; Luo, Huimin ; Luo, Junwei
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2025-04, Vol.26 (1), p.96-27, Article 96
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CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops
Author / Creator:Guo, Yu ; Perez, Andrew A. ; Hazelett, Dennis J. ; Coetzee, Gerhard A. ; Rhie, Suhn Kyong ; Farnham, Peggy J.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-10, Vol.19 (1), p.160-160, Article 160
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Lineage-specific rearrangement of chromatin loops and epigenomic features during adipocytes and osteoblasts commitment
Author / Creator:Hao, Ruo-Han ; Guo, Yan ; Wang, Chen ; Chen, Fei ; Di, Chen-Xi ; Dong, Shan-Shan ; Cao, Qi-Long ; Guo, Jing ; Rong, Yu ; Yao, Shi ; Zhu, Dong-Li ; Chen, Yi-Xiao ; Chen, Hao ; Yang, Tie-Lin
Publisher:London: Nature Publishing Group UK
Journal title:Cell death and differentiation, 2022-12, Vol.29 (12), p.2503-2518
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CTCF-mediated chromatin loops enclose inducible gene regulatory domains
Author / Creator:Oti, Martin ; Falck, Jonas ; Huynen, Martijn A. ; Zhou, Huiqing
Publisher:England: BioMed Central
Journal title:BMC genomics, 2016-03, Vol.17 (1), p.252-252, Article 252
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SiCLAT: simultaneous imaging of chromatin loops and active transcription in living cells
Author / Creator:Wan, Xin ; Kong, Jie ; Hu, Xiaodi ; Liu, Lulu ; Yang, Yuanping ; Li, Hu ; Liu, Gaoao ; Niu, Xingchen ; Chen, Fengling ; Zhang, Dan ; Zhu, Dahai ; Zhang, Yong
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2025-01, Vol.26 (1), p.1-1, Article 1
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Spectral-based detection of chromatin loops in multiplexed super-resolution FISH data
Author / Creator:Liefsoens, Michaël ; Földes, Timothy ; Barbi, Maria
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-09, Vol.15 (1), p.7670-13, Article 7670
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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Author / Creator:Lee, Lindsay ; Yu, Hongyu ; Jia, Bojing Blair ; Jussila, Adam ; Zhu, Chenxu ; Chen, Jiawen ; Xie, Liangqi ; Hafner, Antonina ; Mishra, Shreya ; Wang, Duan Dennis ; Strambio-De-Castillia, Caterina ; Boettiger, Alistair ; Ren, Bing ; Li, Yun ; Hu, Ming
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-08, Vol.14 (1), p.4873-7, Article 4873
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Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression
Author / Creator:Quigley, Ian K. ; Kintner, Chris
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2017-01, Vol.13 (1), p.e1006538-e1006538
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CapsNetYY1: identifying YY1-mediated chromatin loops based on a capsule network architecture
Author / Creator:Zhang, Zhimin ; Li, Fenglin ; Zhao, Jianping ; Zheng, Chunhou
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-08, Vol.24 (1), p.448-448, Article 448
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RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones
Author / Creator:Pezone, Antonio ; Zuchegna, Candida ; Tramontano, Alfonso ; Romano, Antonella ; Russo, Giusi ; de Rosa, Mariarosaria ; Vinciguerra, Maria ; Porcellini, Antonio ; Gottesman, Max E. ; Avvedimento, Enrico Vittorio
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-03, Vol.9 (1), p.3925-3925, Article 3925
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DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes
Author / Creator:Wang, Siguo ; Zhang, Qinhu ; He, Ying ; Cui, Zhen ; Guo, Zhenghao ; Han, Kyungsook ; Huang, De-Shuang
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2022-10, Vol.18 (10), p.e1010572-e1010572
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The anatomy of transcriptionally active chromatin loops in Drosophila primary spermatocytes using super-resolution microscopy
Author / Creator:Ball, Madeleine L. ; Koestler, Stefan A. ; Muresan, Leila ; Rehman, Sohaib Abdul ; O’Holleran, Kevin ; White, Robert
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2023-03, Vol.19 (3), p.e1010654-e1010654
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Back-spliced RNA from retrotransposon binds to centromere and regulates centromeric chromatin loops in maize

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Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development

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Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation

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ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

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Smc3 acetylation, Pds5 and Scc2 control the translocase activity that establishes cohesin-dependent chromatin loops

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CTCF: the protein, the binding partners, the binding sites and their chromatin loops

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Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions

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Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops

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DconnLoop: a deep learning model for predicting chromatin loops based on multi-source data integration

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CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops

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Lineage-specific rearrangement of chromatin loops and epigenomic features during adipocytes and osteoblasts commitment

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CTCF-mediated chromatin loops enclose inducible gene regulatory domains

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SiCLAT: simultaneous imaging of chromatin loops and active transcription in living cells

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Spectral-based detection of chromatin loops in multiplexed super-resolution FISH data

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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

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Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression

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CapsNetYY1: identifying YY1-mediated chromatin loops based on a capsule network architecture

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RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones

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DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes

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The anatomy of transcriptionally active chromatin loops in Drosophila primary spermatocytes using super-resolution microscopy

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