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196 results for Stegle,+Oliver

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Select record 21
ArticlesPeer ReviewedFull Text
Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO
Author / Creator:Velten, Britta ; Braunger, Jana M. ; Argelaguet, Ricard ; Arnol, Damien ; Wirbel, Jakob ; Bredikhin, Danila ; Zeller, Georg ; Stegle, Oliver
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2022-02, Vol.19 (2), p.179-186
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ArticlesPeer ReviewedFull Text
IceR improves proteome coverage and data completeness in global and single-cell proteomics
Author / Creator:Kalxdorf, Mathias ; Müller, Torsten ; Stegle, Oliver ; Krijgsveld, Jeroen
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-08, Vol.12 (1), p.4787-4787, Article 4787
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ArticlesPeer ReviewedFull Text
Computational and analytical challenges in single-cell transcriptomics
Author / Creator:Stegle, Oliver ; Teichmann, Sarah A. ; Marioni, John C.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2015-03, Vol.16 (3), p.133-145
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The Kipoi repository accelerates community exchange and reuse of predictive models for genomics
Author / Creator:Avsec, Žiga ; Kreuzhuber, Roman ; Israeli, Johnny ; Xu, Nancy ; Cheng, Jun ; Shrikumar, Avanti ; Banerjee, Abhimanyu ; Kim, Daniel S. ; Beier, Thorsten ; Urban, Lara ; Kundaje, Anshul ; Stegle, Oliver ; Gagneur, Julien
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2019-06, Vol.37 (6), p.592-600
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ArticlesPeer ReviewedFull Text
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies
Author / Creator:Stegle, Oliver ; Parts, Leopold ; Durbin, Richard ; Winn, John
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2010-05, Vol.6 (5), p.e1000770-e1000770
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Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
Author / Creator:Buettner, Florian ; Natarajan, Kedar N ; Casale, F Paolo ; Proserpio, Valentina ; Scialdone, Antonio ; Theis, Fabian J ; Teichmann, Sarah A ; Marioni, John C ; Stegle, Oliver
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2015-02, Vol.33 (2), p.155-160
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ArticlesPeer ReviewedFull Text
Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single‐cell transcriptomics
Author / Creator:Tirier, Stephan M. ; Mallm, Jan-Philipp ; Steiger, Simon ; Poos, Alexandra M. ; Awwad, Mohamed H. S. ; Giesen, Nicola ; Casiraghi, Nicola ; Susak, Hana ; Bauer, Katharina ; Baumann, Anja ; John, Lukas ; Seckinger, Anja ; Hose, Dirk ; Müller-Tidow, Carsten ; Goldschmidt, Hartmut ; Stegle, Oliver ; Hundemer, Michael ; Weinhold, Niels ; Raab, Marc S. ; Rippe, Karsten
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-11, Vol.12 (1), p.6960-6960, Article 6960
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ArticlesPeer ReviewedFull Text
Cell segmentation-free inference of cell types from in situ transcriptomics data
Author / Creator:Park, Jeongbin ; Choi, Wonyl ; Tiesmeyer, Sebastian ; Long, Brian ; Borm, Lars E. ; Garren, Emma ; Nguyen, Thuc Nghi ; Tasic, Bosiljka ; Codeluppi, Simone ; Graf, Tobias ; Schlesner, Matthias ; Stegle, Oliver ; Eils, Roland ; Ishaque, Naveed
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-06, Vol.12 (1), p.3545-3545, Article 3545
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ArticlesPeer ReviewedFull Text
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
Author / Creator:Clark, Stephen J. ; Argelaguet, Ricard ; Kapourani, Chantriolnt-Andreas ; Stubbs, Thomas M. ; Lee, Heather J. ; Alda-Catalinas, Celia ; Krueger, Felix ; Sanguinetti, Guido ; Kelsey, Gavin ; Marioni, John C. ; Stegle, Oliver ; Reik, Wolf
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-02, Vol.9 (1), p.781-9, Article 781
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Select record 30
ArticlesPeer ReviewedFull Text
A random forest approach to capture genetic effects in the presence of population structure
Author / Creator:Stephan, Johannes ; Stegle, Oliver ; Beyer, Andreas
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-06, Vol.6 (1), p.7432-7432, Article 7432
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Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
Author / Creator:Holland, Christian H. ; Tanevski, Jovan ; Perales-Patón, Javier ; Gleixner, Jan ; Kumar, Manu P. ; Mereu, Elisabetta ; Joughin, Brian A. ; Stegle, Oliver ; Lauffenburger, Douglas A. ; Heyn, Holger ; Szalai, Bence ; Saez-Rodriguez, Julio
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2020-02, Vol.21 (1), p.36-36, Article 36
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Select record 32
ArticlesPeer ReviewedFull Text
Properties of structural variants and short tandem repeats associated with gene expression and complex traits
Author / Creator:Jakubosky, David ; D’Antonio, Matteo ; Bonder, Marc Jan ; Smail, Craig ; Donovan, Margaret K. R. ; Young Greenwald, William W. ; Matsui, Hiroko ; D’Antonio-Chronowska, Agnieszka ; Stegle, Oliver ; Smith, Erin N. ; Montgomery, Stephen B. ; DeBoever, Christopher ; Frazer, Kelly A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-06, Vol.11 (1), p.2927-2927, Article 2927
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Select record 33
ArticlesPeer ReviewedFull Text
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
Author / Creator:Dubin, Manu J ; Zhang, Pei ; Meng, Dazhe ; Remigereau, Marie-Stanislas ; Osborne, Edward J ; Paolo Casale, Francesco ; Drewe, Philipp ; Kahles, André ; Jean, Geraldine ; Vilhjálmsson, Bjarni ; Jagoda, Joanna ; Irez, Selen ; Voronin, Viktor ; Song, Qiang ; Long, Quan ; Rätsch, Gunnar ; Stegle, Oliver ; Clark, Richard M ; Nordborg, Magnus
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2015-05, Vol.4, p.e05255-e05255
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ArticlesPeer ReviewedFull Text
The Organoid Cell Atlas
Author / Creator:Bock, Christoph ; Boutros, Michael ; Camp, J. Gray ; Clarke, Laura ; Clevers, Hans ; Knoblich, Juergen A. ; Liberali, Prisca ; Regev, Aviv ; Rios, Anne C. ; Stegle, Oliver ; Stunnenberg, Hendrik G. ; Teichmann, Sarah A. ; Treutlein, Barbara ; Vries, Robert G. J.
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2021-01, Vol.39 (1), p.13-17
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Select record 35
ArticlesPeer ReviewedFull Text
Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
Author / Creator:Jerber, Julie ; Seaton, Daniel D. ; Cuomo, Anna S. E. ; Kumasaka, Natsuhiko ; Haldane, James ; Steer, Juliette ; Patel, Minal ; Pearce, Daniel ; Andersson, Malin ; Bonder, Marc Jan ; Mountjoy, Ed ; Ghoussaini, Maya ; Lancaster, Madeline A. ; Marioni, John C. ; Merkle, Florian T. ; Gaffney, Daniel J. ; Stegle, Oliver
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2021-03, Vol.53 (3), p.304-312
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Select record 36
ArticlesPeer ReviewedFull Text
Multi-omics profiling of mouse gastrulation at single-cell resolution
Author / Creator:Argelaguet, Ricard ; Clark, Stephen J. ; Mohammed, Hisham ; Stapel, L. Carine ; Krueger, Christel ; Kapourani, Chantriolnt-Andreas ; Imaz-Rosshandler, Ivan ; Lohoff, Tim ; Xiang, Yunlong ; Hanna, Courtney W. ; Smallwood, Sebastien ; Ibarra-Soria, Ximena ; Buettner, Florian ; Sanguinetti, Guido ; Xie, Wei ; Krueger, Felix ; Göttgens, Berthold ; Rugg-Gunn, Peter J. ; Kelsey, Gavin ; Dean, Wendy ; Nichols, Jennifer ; Stegle, Oliver ; Marioni, John C. ; Reik, Wolf
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2019-12, Vol.576 (7787), p.487-491
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ArticlesPeer ReviewedFull Text
pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls
Author / Creator:Snajder, Rene ; Leger, Adrien ; Stegle, Oliver ; Bonder, Marc Jan
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2023-04, Vol.24 (1), p.83-83, Article 83
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Select record 38
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Spatial multiomics map of trophoblast development in early pregnancy
Author / Creator:Arutyunyan, Anna ; Roberts, Kenny ; Troulé, Kevin ; Wong, Frederick C. K. ; Sheridan, Megan A. ; Kats, Ilia ; Garcia-Alonso, Luz ; Velten, Britta ; Hoo, Regina ; Ruiz-Morales, Elias R. ; Sancho-Serra, Carmen ; Shilts, Jarrod ; Handfield, Louis-Francois ; Marconato, Luca ; Tuck, Elizabeth ; Gardner, Lucy ; Mazzeo, Cecilia Icoresi ; Li, Qian ; Kelava, Iva ; Wright, Gavin J. ; Prigmore, Elena ; Teichmann, Sarah A. ; Bayraktar, Omer Ali ; Moffett, Ashley ; Stegle, Oliver ; Turco, Margherita Y. ; Vento-Tormo, Roser
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2023-04, Vol.616 (7955), p.143-151
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ArticlesPeer ReviewedFull Text
f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq
Author / Creator:Buettner, Florian ; Pratanwanich, Naruemon ; McCarthy, Davis J. ; Marioni, John C. ; Stegle, Oliver
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2017-11, Vol.18 (1), p.212-212, Article 212
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Select record 40
ArticlesPeer ReviewedFull Text
Multi-tissue DNA methylation age predictor in mouse
Author / Creator:Stubbs, Thomas M. ; Bonder, Marc Jan ; Stark, Anne-Katrien ; Krueger, Felix ; von Meyenn, Ferdinand ; Stegle, Oliver ; Reik, Wolf
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2017-04, Vol.18 (1), p.68-68, Article 68
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Showing 21 to 40 of 196 results

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Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO

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IceR improves proteome coverage and data completeness in global and single-cell proteomics

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Computational and analytical challenges in single-cell transcriptomics

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The Kipoi repository accelerates community exchange and reuse of predictive models for genomics

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A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies

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Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

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Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single‐cell transcriptomics

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Cell segmentation-free inference of cell types from in situ transcriptomics data

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scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

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A random forest approach to capture genetic effects in the presence of population structure

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Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

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Properties of structural variants and short tandem repeats associated with gene expression and complex traits

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DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

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The Organoid Cell Atlas

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Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

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Multi-omics profiling of mouse gastrulation at single-cell resolution

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pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls

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Spatial multiomics map of trophoblast development in early pregnancy

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f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq

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Multi-tissue DNA methylation age predictor in mouse

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