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873 results for Chromatin+loops

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Select record 41
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Lineage-specific rearrangement of chromatin loops and epigenomic features during adipocytes and osteoblasts commitment
Author / Creator:Hao, Ruo-Han ; Guo, Yan ; Wang, Chen ; Chen, Fei ; Di, Chen-Xi ; Dong, Shan-Shan ; Cao, Qi-Long ; Guo, Jing ; Rong, Yu ; Yao, Shi ; Zhu, Dong-Li ; Chen, Yi-Xiao ; Chen, Hao ; Yang, Tie-Lin
Publisher:London: Nature Publishing Group UK
Journal title:Cell death and differentiation, 2022-12, Vol.29 (12), p.2503-2518
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CTCF-mediated chromatin loops enclose inducible gene regulatory domains
Author / Creator:Oti, Martin ; Falck, Jonas ; Huynen, Martijn A. ; Zhou, Huiqing
Publisher:England: BioMed Central
Journal title:BMC genomics, 2016-03, Vol.17 (1), p.252-252, Article 252
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SiCLAT: simultaneous imaging of chromatin loops and active transcription in living cells
Author / Creator:Wan, Xin ; Kong, Jie ; Hu, Xiaodi ; Liu, Lulu ; Yang, Yuanping ; Li, Hu ; Liu, Gaoao ; Niu, Xingchen ; Chen, Fengling ; Zhang, Dan ; Zhu, Dahai ; Zhang, Yong
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2025-01, Vol.26 (1), p.1-1, Article 1
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Spectral-based detection of chromatin loops in multiplexed super-resolution FISH data
Author / Creator:Liefsoens, Michaël ; Földes, Timothy ; Barbi, Maria
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-09, Vol.15 (1), p.7670-13, Article 7670
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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Author / Creator:Lee, Lindsay ; Yu, Hongyu ; Jia, Bojing Blair ; Jussila, Adam ; Zhu, Chenxu ; Chen, Jiawen ; Xie, Liangqi ; Hafner, Antonina ; Mishra, Shreya ; Wang, Duan Dennis ; Strambio-De-Castillia, Caterina ; Boettiger, Alistair ; Ren, Bing ; Li, Yun ; Hu, Ming
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-08, Vol.14 (1), p.4873-7, Article 4873
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Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression
Author / Creator:Quigley, Ian K. ; Kintner, Chris
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2017-01, Vol.13 (1), p.e1006538-e1006538
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CapsNetYY1: identifying YY1-mediated chromatin loops based on a capsule network architecture
Author / Creator:Zhang, Zhimin ; Li, Fenglin ; Zhao, Jianping ; Zheng, Chunhou
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-08, Vol.24 (1), p.448-448, Article 448
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RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones
Author / Creator:Pezone, Antonio ; Zuchegna, Candida ; Tramontano, Alfonso ; Romano, Antonella ; Russo, Giusi ; de Rosa, Mariarosaria ; Vinciguerra, Maria ; Porcellini, Antonio ; Gottesman, Max E. ; Avvedimento, Enrico Vittorio
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-03, Vol.9 (1), p.3925-3925, Article 3925
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DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes
Author / Creator:Wang, Siguo ; Zhang, Qinhu ; He, Ying ; Cui, Zhen ; Guo, Zhenghao ; Han, Kyungsook ; Huang, De-Shuang
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2022-10, Vol.18 (10), p.e1010572-e1010572
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The anatomy of transcriptionally active chromatin loops in Drosophila primary spermatocytes using super-resolution microscopy
Author / Creator:Ball, Madeleine L. ; Koestler, Stefan A. ; Muresan, Leila ; Rehman, Sohaib Abdul ; O’Holleran, Kevin ; White, Robert
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2023-03, Vol.19 (3), p.e1010654-e1010654
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Chromatin loops gather targets of upstream regulators together for efficient gene transcription regulation during vernalization in wheat
Author / Creator:Liu, Yanyan ; Xu, Xintong ; He, Chao ; Jin, Liujie ; Zhou, Ziru ; Gao, Jie ; Guo, Minrong ; Wang, Xin ; Chen, Chuanye ; Ayaad, Mohammed H. ; Li, Xingwang ; Yan, Wenhao
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-12, Vol.25 (1), p.306-306, Article 306
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SilenceREIN: seeking silencers on anchors of chromatin loops by deep graph neural networks
Author / Creator:Pan, Jian-Hua ; Du, Pu-Feng
Publisher:England: Oxford Publishing Limited (England)
Journal title:Briefings in bioinformatics, 2024-01, Vol.25 (1)
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Transcriptionally active chromatin loops contain both ‘active’ and ‘inactive’ histone modifications that exhibit exclusivity at the level of nucleosome clusters
Author / Creator:Koestler, Stefan A. ; Ball, Madeleine L. ; Muresan, Leila ; Dinakaran, Vineet ; White, Robert
Publisher:England: BioMed Central Ltd
Journal title:Epigenetics & chromatin, 2024-03, Vol.17 (1), p.8-8, Article 8
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Eco1-dependent cohesin acetylation anchors chromatin loops and cohesion to define functional meiotic chromosome domains
Author / Creator:Barton, Rachael E ; Massari, Lucia F ; Robertson, Daniel ; Marston, Adèle L
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2022-02, Vol.11
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Harnessing chromatin loops to identify susceptibility genes in different populations for Alzheimer’s disease: rs3851179 links to PICALM not EED
Author / Creator:Wang, Liyong ; Xu, Wanying ; Rajabli, Farid ; Celis, Katrina ; Lu, Leina ; Gearing, Marla ; Bennett, David A. ; Flanagan, Margaret E ; Weintraub, Sandra ; Geula, Changiz ; Schuck, Theresa ; Scott, William K. ; Dykxhoorn, Derek M. ; Griswold, Anthony J. ; Pericak‐Vance, Margaret A. ; Young, Juan I ; Jin, Fulai ; Vance, Jeffery M.
Publisher:Hoboken: John Wiley and Sons Inc
Journal title:Alzheimer's & dementia, 2024-12, Vol.20 (S1), p.n/a
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Identification of chromatin loops from Hi-C interaction matrices by CTCF–CTCF topology classification
Author / Creator:Galan, Silvia ; Serra, François ; Marti-Renom, Marc A
Publisher:England: Oxford University Press
Journal title:NAR genomics and bioinformatics, 2022-03, Vol.4 (1), p.lqac021
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Mir-483-5p-mediated activating of IGF2/H19 enhancer up-regulates IGF2/H19 expression via chromatin loops to promote the malignant progression of hepatocellular carcinoma
Author / Creator:Chen, Weiwei ; Wu, Chutian ; Li, Yuting ; Wang, Tonghua ; Huang, Miaoling ; Wang, Min ; Long, Linjing ; Chen, Yanfang ; Feng, Shufen ; Liu, Xuyou ; Tang, Shaohui
Publisher:England: BioMed Central Ltd
Journal title:Molecular cancer, 2025-01, Vol.24 (1), p.10-16, Article 10
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A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops
Author / Creator:Ryu, Jayoung ; Kim, Hyunwoong ; Yang, Dongchan ; Lee, Andrew J. ; Jung, Inkyung
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-03, Vol.20 (S3), p.127-127, Article 127
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A Bioconductor/R Workflow for the Detection and Visualization of Differential Chromatin Loops [version 1; peer review: 3 approved, 1 approved with reservations]
Author / Creator:Flores, JP ; Davis, Eric ; Kramer, Nicole ; Love, Michael I ; Phanstiel, Douglas H
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2024, Vol.13, p.1346
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A Bioconductor/R Workflow for the Detection and Visualization of Differential Chromatin Loops [version 1; peer review: 2 approved] A Bioconductor/R Workflow for the Detection and Visualization of Diff...
Author / Creator:Eric Davis ; JP Flores ; Michael I Love ; Douglas H Phanstiel ; Nicole Kramer
Publisher:F1000 Research Ltd
Journal title:F1000 research, 2024-11, Vol.13
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Showing 41 to 60 of 873 results

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Lineage-specific rearrangement of chromatin loops and epigenomic features during adipocytes and osteoblasts commitment

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CTCF-mediated chromatin loops enclose inducible gene regulatory domains

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SiCLAT: simultaneous imaging of chromatin loops and active transcription in living cells

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Spectral-based detection of chromatin loops in multiplexed super-resolution FISH data

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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

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Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression

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CapsNetYY1: identifying YY1-mediated chromatin loops based on a capsule network architecture

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RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones

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DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes

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The anatomy of transcriptionally active chromatin loops in Drosophila primary spermatocytes using super-resolution microscopy

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Chromatin loops gather targets of upstream regulators together for efficient gene transcription regulation during vernalization in wheat

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SilenceREIN: seeking silencers on anchors of chromatin loops by deep graph neural networks

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Transcriptionally active chromatin loops contain both ‘active’ and ‘inactive’ histone modifications that exhibit exclusivity at the level of nucleosome clusters

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Eco1-dependent cohesin acetylation anchors chromatin loops and cohesion to define functional meiotic chromosome domains

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Harnessing chromatin loops to identify susceptibility genes in different populations for Alzheimer’s disease: rs3851179 links to PICALM not EED

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Identification of chromatin loops from Hi-C interaction matrices by CTCF–CTCF topology classification

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Mir-483-5p-mediated activating of IGF2/H19 enhancer up-regulates IGF2/H19 expression via chromatin loops to promote the malignant progression of hepatocellular carcinoma

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A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops

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A Bioconductor/R Workflow for the Detection and Visualization of Differential Chromatin Loops [version 1; peer review: 3 approved, 1 approved with reservations]

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A Bioconductor/R Workflow for the Detection and Visualization of Differential Chromatin Loops [version 1; peer review: 2 approved] A Bioconductor/R Workflow for the Detection and Visualization of Diff...

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