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ArticlesPeer ReviewedFull Text
Variability within rare cell states enables multiple paths toward drug resistance
Author / Creator:Emert, Benjamin L. ; Cote, Christopher J. ; Torre, Eduardo A. ; Dardani, Ian P. ; Jiang, Connie L. ; Jain, Naveen ; Shaffer, Sydney M. ; Raj, Arjun
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2021-07, Vol.39 (7), p.865-876
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ArticlesPeer ReviewedFull Text
Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells
Author / Creator:Goyal, Yogesh ; Busch, Gianna T. ; Pillai, Maalavika ; Li, Jingxin ; Boe, Ryan H. ; Grody, Emanuelle I. ; Chelvanambi, Manoj ; Dardani, Ian P. ; Emert, Benjamin ; Bodkin, Nicholas ; Braun, Jonas ; Fingerman, Dylan ; Kaur, Amanpreet ; Jain, Naveen ; Ravindran, Pavithran T. ; Mellis, Ian A. ; Kiani, Karun ; Alicea, Gretchen M. ; Fane, Mitchell E. ; Ahmed, Syeda Subia ; Li, Haiyin ; Chen, Yeqing ; Chai, Cedric ; Kaster, Jessica ; Witt, Russell G. ; Lazcano, Rossana ; Ingram, Davis R. ; Johnson, Sarah B. ; Wani, Khalida ; Dunagin, Margaret C. ; Lazar, Alexander J. ; Weeraratna, Ashani T. ; Wargo, Jennifer A. ; Herlyn, Meenhard ; Raj, Arjun
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2023-08, Vol.620 (7974), p.651-659
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ArticlesPeer ReviewedFull Text
Post-transcriptional splicing can occur in a slow-moving zone around the gene
Author / Creator:Coté, Allison ; O'Farrell, Aoife ; Dardani, Ian ; Dunagin, Margaret ; Coté, Chris ; Wan, Yihan ; Bayatpour, Sareh ; Drexler, Heather L ; Alexander, Katherine A ; Chen, Fei ; Wassie, Asmamaw T ; Patel, Rohan ; Pham, Kenneth ; Boyden, Edward S ; Berger, Shelly ; Phillips-Cremins, Jennifer ; Churchman, L Stirling ; Raj, Arjun
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2024-04, Vol.12
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ArticlesPeer ReviewedFull Text
Correction: Amendments: Author Correction: ClampFISH detects individual nucleic acid molecules using click chemistry–based amplification
Author / Creator:Rouhanifard, Sara H ; Mellis, Ian A ; Dunagin, Margaret ; Bayatpour, Sareh ; Jiang, Connie L ; Dardani, Ian ; Symmons, Orsolya ; Emert, Benjamin ; Torre, Eduardo ; Cote, Allison ; Sullivan, Alessandra ; Stamatoyannopoulos, John A ; Raj, Arjun
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2019-01, Vol.37 (1), p.102-102
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ArticlesPeer ReviewedFull Text
ClampFISH detects individual nucleic acid molecules using click chemistry–based amplification
Author / Creator:Rouhanifard, Sara H ; Mellis, Ian A ; Dunagin, Margaret ; Bayatpour, Sareh ; Jiang, Connie L ; Dardani, Ian ; Symmons, Orsolya ; Emert, Benjamin ; Torre, Eduardo ; Cote, Allison ; Sullivan, Alessandra ; Stamatoyannopoulos, John A ; Raj, Arjun
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2019-01, Vol.37 (1), p.84-89
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ArticlesPeer ReviewedFull Text
ClampFISH 2.0 enables rapid, scalable amplified RNA detection in situ
Author / Creator:Dardani, Ian ; Emert, Benjamin L. ; Goyal, Yogesh ; Jiang, Connie L. ; Kaur, Amanpreet ; Lee, Jasmine ; Rouhanifard, Sara H. ; Alicea, Gretchen M. ; Fane, Mitchell E. ; Xiao, Min ; Herlyn, Meenhard ; Weeraratna, Ashani T. ; Raj, Arjun
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2022-11, Vol.19 (11), p.1403-1410
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ArticlesPeer ReviewedFull Text
Variability within rare cell states enables multiple paths towards drug resistance
Author / Creator:Emert, Benjamin L. ; Cote, Christopher ; Torre, Eduardo A. ; Dardani, Ian P. ; Jiang, Connie L. ; Jain, Naveen ; Shaffer, Sydney M. ; Raj, Arjun
Journal title:Nature biotechnology, 2021-02, Vol.39 (7), p.865-876
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ArticlesFull Text
Pre-determined diversity in resistant fates emerges from homogenous cells after anti-cancer drug treatment
Author / Creator:Goyal, Yogesh ; Dardani, Ian P ; Busch, Gianna T ; Emert, Benjamin ; Fingerman, Dylan ; Kaur, Amanpreet ; Jain, Naveen ; Mellis, Ian A ; Li, Jingxin ; Kiani, Karun ; Fane, Mitchell E ; Weeraratna, Ashani T ; Herlyn, Meenhard ; Raj, Arjun
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-12
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ArticlesPeer ReviewedFull Text
Post-transcriptional splicing can occur in a slow-moving zone around the gene
Author / Creator:Coté, Allison ; O'Farrell, Aoife ; Dardani, Ian ; Dunagin, Margaret ; Coté, Chris ; Wan, Yihan ; Bayatpour, Sareh ; Drexler, Heather L ; Alexander, Katherine A ; Chen, Fei ; Wassie, Asmamaw T ; Patel, Rohan ; Pham, Kenneth ; Boyden, Edward S ; Berger, Shelly ; Phillips-Cremins, Jennifer ; Churchman, L Stirling ; Raj, Arjun
Journal title:eLife, 2024-04, Vol.12
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ArticlesFull Text
Variability within rare cell states enables multiple paths towards drug resistance
Author / Creator:Emert, Benjamin L ; Cote, Christopher ; Torre, Eduardo A ; Dardani, Ian P ; Jiang, Connie L ; Jain, Naveen ; Shaffer, Sydney M ; Raj, Arjun
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-12
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ArticlesPeer ReviewedFull Text
Amendments: Author Correction: ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification
Author / Creator:Rouhanifard, Sara H ; Mellis, Ian A ; Dunagin, Margaret ; Bayatpour, Sareh ; Jiang, Connie L ; Dardani, Ian ; Symmons, Orsolya ; Emert, Benjamin ; Torre, Eduardo ; Cote, Allison ; Sullivan, Alessandra ; Stamatoyannopoulos, John A ; Raj, Arjun
Publisher:United States: Nature Publishing Group
Journal title:Nature biotechnology, 2019-01, Vol.37 (1), p.102
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ArticlesPeer ReviewedFull Text
Algorithms for optimization of branching gravity-driven water networks
Author / Creator:Dardani, Ian ; Jones, Gerard F.
Publisher:Katlenburg-Lindau: Copernicus GmbH
Journal title:Drinking water engineering and science, 2018-05, Vol.11 (1), p.67-85
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ArticlesFull Text
Piscis: a novel loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning
Author / Creator:Niu, Zijian ; O'farrell, Aoife ; Li, Jingxin ; Reffsin, Sam ; Jain, Naveen ; Dardani, Ian ; Goyal, Yogesh ; Raj, Arjun
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2024-01
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ArticlesFull Text
Metastatic potential in clonal melanoma cells is driven by a rare, early-invading subpopulation
Author / Creator:Kaur, Amanpreet ; Cuenca, Luciann ; Kiani, Karun ; Busch, Gianna ; Fingerman, Dylan ; Dunagin, Margaret C ; Li, Jingxin ; Dardani, Ian ; Sanford, Eric M ; Pemberton, Jordan ; Goyal, Yogesh ; Weeraratna, Ashani T ; Herlyn, Meenhard ; Raj, Arjun
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2023-02
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ArticlesFull Text
Post-transcriptional splicing can occur in a slow-moving zone around the gene
Author / Creator:Cote, Allison J ; O'farrell, Aoife ; Dardani, Ian ; Dunagin, Margaret ; Cote, Christopher J ; Wan, Yihan ; Bayatpour, Sareh ; Drexler, Heather L ; Alexander, Katherine A ; Chen, Fei ; Wassie, Asmamaw T ; Patel, Rohan ; Pham, Kenneth ; Boyden, Edward S ; Berger, Shelley ; Phillips-Cremins, Jennifer ; L Stirling Churchman ; Raj, Arjun
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2023-11
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ArticlesFull Text
Parallel social information processing circuits are differentially impacted in autism
Author / Creator:Lewis, Eastman M ; Stein-O'brien, Genevieve ; Patino, Alejandra ; Nardou, Romain ; Grossman, Cooper D ; Brown, Matthew ; Bangamwabo, Bidii ; Ndiaye, Ndeye ; Giovinazzo, Daniel ; Dardani, Ian ; Jiang, Connie ; Goff, Loyal ; Dolen, Gul
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-04
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Variability within rare cell states enables multiple paths toward drug resistance

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Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells

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Post-transcriptional splicing can occur in a slow-moving zone around the gene

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Correction: Amendments: Author Correction: ClampFISH detects individual nucleic acid molecules using click chemistry–based amplification

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ClampFISH detects individual nucleic acid molecules using click chemistry–based amplification

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ClampFISH 2.0 enables rapid, scalable amplified RNA detection in situ

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Variability within rare cell states enables multiple paths towards drug resistance

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Pre-determined diversity in resistant fates emerges from homogenous cells after anti-cancer drug treatment

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Post-transcriptional splicing can occur in a slow-moving zone around the gene

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Variability within rare cell states enables multiple paths towards drug resistance

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Amendments: Author Correction: ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification

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Algorithms for optimization of branching gravity-driven water networks

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Piscis: a novel loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning

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Metastatic potential in clonal melanoma cells is driven by a rare, early-invading subpopulation

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Post-transcriptional splicing can occur in a slow-moving zone around the gene

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Parallel social information processing circuits are differentially impacted in autism

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