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ArticlesPeer ReviewedFull Text
Hypermutation in human cancer genomes: footprints and mechanisms
Author / Creator:Roberts, Steven A. ; Gordenin, Dmitry A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Cancer, 2014-12, Vol.14 (12), p.786-800
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An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers
Author / Creator:Chan, Kin ; Roberts, Steven A ; Klimczak, Leszek J ; Sterling, Joan F ; Saini, Natalie ; Malc, Ewa P ; Kim, Jaegil ; Kwiatkowski, David J ; Fargo, David C ; Mieczkowski, Piotr A ; Getz, Gad ; Gordenin, Dmitry A
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2015-09, Vol.47 (9), p.1067-1072
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Similarity between mutation spectra in hypermutated genomes of rubella virus and in SARS-CoV-2 genomes accumulated during the COVID-19 pandemic
Author / Creator:Klimczak, Leszek J ; Randall, Thomas A ; Saini, Natalie ; Li, Jian-Liang ; Gordenin, Dmitry A
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-10, Vol.15 (10), p.e0237689
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Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies
Author / Creator:Perelygina, Ludmila ; Chen, Min-Hsin ; Suppiah, Suganthi ; Adebayo, Adebola ; Abernathy, Emily ; Dorsey, Morna ; Bercovitch, Lionel ; Paris, Kenneth ; White, Kevin P ; Krol, Alfons ; Dhossche, Julie ; Torshin, Ivan Y ; Saini, Natalie ; Klimczak, Leszek J ; Gordenin, Dmitry A ; Zharkikh, Andrey ; Plotkin, Stanley ; Sullivan, Kathleen E ; Icenogle, Joseph
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2019-10, Vol.15 (10), p.e1008080
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ArticlesPeer ReviewedFull Text
Mutational signatures of redox stress in yeast single-strand DNA and of aging in human mitochondrial DNA share a common feature
Author / Creator:Degtyareva, Natalya P ; Saini, Natalie ; Sterling, Joan F ; Placentra, Victoria C ; Klimczak, Leszek J ; Gordenin, Dmitry A ; Doetsch, Paul W
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2019-05, Vol.17 (5), p.e3000263
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Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation
Author / Creator:Sakofsky, Cynthia J ; Saini, Natalie ; Klimczak, Leszek J ; Chan, Kin ; Malc, Ewa P ; Mieczkowski, Piotr A ; Burkholder, Adam B ; Fargo, David ; Gordenin, Dmitry A
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2019-09, Vol.17 (9), p.e3000464
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ArticlesPeer ReviewedFull Text
UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin
Author / Creator:Saini, Natalie ; Giacobone, Camille K ; Klimczak, Leszek J ; Papas, Brian N ; Burkholder, Adam B ; Li, Jian-Liang ; Fargo, David C ; Bai, Re ; Gerrish, Kevin ; Innes, Cynthia L ; Schurman, Shepherd H ; Gordenin, Dmitry A
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2021-01, Vol.17 (1), p.e1009302
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ArticlesPeer ReviewedFull Text
From RNA World to SARS-CoV-2: The Edited Story of RNA Viral Evolution
Author / Creator:Kockler, Zachary W. ; Gordenin, Dmitry A.
Publisher:Basel: MDPI AG
Journal title:Cells (Basel, Switzerland), 2021-06, Vol.10 (6), p.1557
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ArticlesPeer ReviewedFull Text
The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts
Author / Creator:Saini, Natalie ; Roberts, Steven A ; Klimczak, Leszek J ; Chan, Kin ; Grimm, Sara A ; Dai, Shuangshuang ; Fargo, David C ; Boyer, Jayne C ; Kaufmann, William K ; Taylor, Jack A ; Lee, Eunjung ; Cortes-Ciriano, Isidro ; Park, Peter J ; Schurman, Shepherd H ; Malc, Ewa P ; Mieczkowski, Piotr A ; Gordenin, Dmitry A
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2016-10, Vol.12 (10), p.e1006385
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ArticlesPeer ReviewedFull Text
Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae
Author / Creator:Yang, Yong ; Sterling, Joan ; Storici, Francesca ; Resnick, Michael A ; Gordenin, Dmitry A
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2008-11, Vol.4 (11), p.e1000264-e1000264
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ArticlesPeer ReviewedFull Text
Base damage within single-strand DNA underlies in vivo hypermutability induced by a ubiquitous environmental agent
Author / Creator:Chan, Kin ; Sterling, Joan F ; Roberts, Steven A ; Bhagwat, Ashok S ; Resnick, Michael A ; Gordenin, Dmitry A
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2012-12, Vol.8 (12), p.e1003149
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ArticlesPeer ReviewedFull Text
Cohesin Is limiting for the suppression of DNA damage-induced recombination between homologous chromosomes
Author / Creator:Covo, Shay ; Westmoreland, James W ; Gordenin, Dmitry A ; Resnick, Michael A
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2010-07, Vol.6 (7), p.e1001006
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ArticlesPeer ReviewedFull Text
Correction: Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation
Author / Creator:Sakofsky, Cynthia J ; Saini, Natalie ; Klimczak, Leszek J ; Chan, Kin ; Malc, Ewa P ; Mieczkowski, Piotr A ; Burkholder, Adam B ; Fargo, David ; Gordenin, Dmitry A
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2020-03, Vol.18 (3), p.e3000695-e3000695
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ArticlesPeer ReviewedFull Text
The sister chromatid cohesion pathway suppresses multiple chromosome gain and chromosome amplification
Author / Creator:Covo, Shay ; Puccia, Christopher M ; Argueso, Juan Lucas ; Gordenin, Dmitry A ; Resnick, Michael A
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2014-02, Vol.196 (2), p.373-384
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ArticlesPeer ReviewedFull Text
Alkylation base damage is converted into repairable double-strand breaks and complex intermediates in G2 cells lacking AP endonuclease
Author / Creator:Ma, Wenjian ; Westmoreland, Jim W ; Gordenin, Dmitry A ; Resnick, Mike A
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2011-04, Vol.7 (4), p.e1002059
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ArticlesPeer ReviewedFull Text
Genome-wide model for the normal eukaryotic DNA replication fork
Author / Creator:Larrea, Andres A. ; Lujan, Scott A. ; McElhinny, Stephanie A. Nick ; Mieczkowski, Piotr A. ; Resnick, Michael A. ; Gordenin, Dmitry A. ; Kunkel, Thomas A.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2010-10, Vol.107 (41), p.17674-17679
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ArticlesPeer ReviewedFull Text
Suppression of allelic recombination and aneuploidy by cohesin is independent of Chk1 in Saccharomyces cerevisiae
Author / Creator:Covo, Shay ; Chiou, Eric ; Gordenin, Dmitry A ; Resnick, Michael A
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-12, Vol.9 (12), p.e113435
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ArticlesPeer ReviewedFull Text
Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast
Author / Creator:Storici, F ; Durham, C.L ; Gordenin, D.A ; Resnick, M.A
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2003-12, Vol.100 (25), p.14994-14999
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ArticlesPeer ReviewedFull Text
APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis
Author / Creator:Maciejowski, John ; Chatzipli, Aikaterini ; Dananberg, Alexandra ; Chu, Kevan ; Toufektchan, Eleonore ; Klimczak, Leszek J. ; Gordenin, Dmitry A. ; Campbell, Peter J. ; de Lange, Titia
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2020-09, Vol.52 (9), p.884-890
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ArticlesPeer ReviewedFull Text
An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
Author / Creator:Roberts, Steven A ; Lawrence, Michael S ; Klimczak, Leszek J ; Grimm, Sara A ; Fargo, David ; Stojanov, Petar ; Kiezun, Adam ; Kryukov, Gregory V ; Carter, Scott L ; Saksena, Gordon ; Harris, Shawn ; Shah, Ruchir R ; Resnick, Michael A ; Getz, Gad ; Gordenin, Dmitry A
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2013-09, Vol.45 (9), p.970-976
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Hypermutation in human cancer genomes: footprints and mechanisms

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An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers

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Similarity between mutation spectra in hypermutated genomes of rubella virus and in SARS-CoV-2 genomes accumulated during the COVID-19 pandemic

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Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies

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Mutational signatures of redox stress in yeast single-strand DNA and of aging in human mitochondrial DNA share a common feature

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Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation

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UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin

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From RNA World to SARS-CoV-2: The Edited Story of RNA Viral Evolution

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The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts

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Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae

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Base damage within single-strand DNA underlies in vivo hypermutability induced by a ubiquitous environmental agent

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Cohesin Is limiting for the suppression of DNA damage-induced recombination between homologous chromosomes

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Correction: Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation

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The sister chromatid cohesion pathway suppresses multiple chromosome gain and chromosome amplification

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Alkylation base damage is converted into repairable double-strand breaks and complex intermediates in G2 cells lacking AP endonuclease

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Genome-wide model for the normal eukaryotic DNA replication fork

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Suppression of allelic recombination and aneuploidy by cohesin is independent of Chk1 in Saccharomyces cerevisiae

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Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast

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APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis

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An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers

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