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17 results for Leary,+Shay

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ArticlesPeer ReviewedFull Text
HIV integration sites in latently infected cell lines: evidence of ongoing replication
Author / Creator:Symons, Jori ; Chopra, Abha ; Malatinkova, Eva ; De Spiegelaere, Ward ; Leary, Shay ; Cooper, Don ; Abana, Chike O. ; Rhodes, Ajantha ; Rezaei, Simin D. ; Vandekerckhove, Linos ; Mallal, Simon ; Lewin, Sharon R. ; Cameron, Paul U.
Publisher:England: BioMed Central Ltd
Journal title:Retrovirology, 2017-01, Vol.14 (1), p.2-2, Article 2
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ArticlesPeer ReviewedFull Text
Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV
Author / Creator:Currenti, Jennifer ; Chopra, Abha ; John, Mina ; Leary, Shay ; McKinnon, Elizabeth ; Alves, Eric ; Pilkinton, Mark ; Smith, Rita ; Barnett, Louise ; McDonnell, Wyatt J. ; Lucas, Michaela ; Noel, Francine ; Mallal, Simon ; Conrad, Joseph A. ; Kalams, Spyros A. ; Gaudieri, Silvana
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2019-12, Vol.15 (12), p.e1008177-e1008177
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Adaptation to HLA-associated immune pressure over the course of HIV infection and in circulating HIV-1 strains
Author / Creator:Alves, Eric ; Al-Kaabi, Marwah ; Keane, Niamh M. ; Leary, Shay ; Almeida, Coral-Ann M. ; Deshpande, Pooja ; Currenti, Jennifer ; Chopra, Abha ; Smith, Rita ; Castley, Alison ; Mallal, Simon ; Kalams, Spyros A. ; Gaudieri, Silvana ; John, Mina
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2022-12, Vol.18 (12), p.e1010965
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ArticlesPeer ReviewedFull Text
Identifying Patient-Specific Epstein-Barr Nuclear Antigen-1 Genetic Variation and Potential Autoreactive Targets Relevant to Multiple Sclerosis Pathogenesis
Author / Creator:Tschochner, Monika ; Leary, Shay ; Cooper, Don ; Strautins, Kaija ; Chopra, Abha ; Clark, Hayley ; Choo, Linda ; Dunn, David ; James, Ian ; Carroll, William M. ; Kermode, Allan G. ; Nolan, David
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-02, Vol.11 (2), p.e0147567-e0147567
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ArticlesPeer ReviewedFull Text
Abacavir inhibits but does not cause self-reactivity to HLA-B57:01-restricted EBV specific T cell receptors
Author / Creator:Sooda, Anuradha ; Rwandamuriye, Francois ; Wanjalla, Celestine N. ; Jing, Lichen ; Koelle, David M. ; Peters, Bjoern ; Leary, Shay ; Chopra, Abha ; Calderwood, Michael A. ; Mallal, Simon A. ; Pavlos, Rebecca ; Watson, Mark ; Phillips, Elizabeth J. ; Redwood, Alec J.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2022-02, Vol.5 (1), p.133-13, Article 133
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ArticlesPeer ReviewedFull Text
Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections
Author / Creator:Parker, Matthew D. ; Stewart, Hazel ; Shehata, Ola M. ; Lindsey, Benjamin B. ; Shah, Dhruv R. ; Hsu, Sharon ; Keeley, Alexander J. ; Partridge, David G. ; Leary, Shay ; Cope, Alison ; State, Amy ; Johnson, Katie ; Ali, Nasar ; Raghei, Rasha ; Heffer, Joe ; Smith, Nikki ; Zhang, Peijun ; Gallis, Marta ; Louka, Stavroula F. ; Hornsby, Hailey R. ; Alamri, Hatoon ; Whiteley, Max ; Foulkes, Benjamin H. ; Christou, Stella ; Wolverson, Paige ; Pohare, Manoj ; Hansford, Samantha E. ; Green, Luke R. ; Evans, Cariad ; Raza, Mohammad ; Wang, Dennis ; Firth, Andrew E. ; Edgar, James R. ; Gaudieri, Silvana ; Mallal, Simon ; Collins, Mark O. ; Peden, Andrew A. ; de Silva, Thushan I.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2022-07, Vol.5 (1), p.666-10, Article 666
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ArticlesPeer ReviewedFull Text
Helicobacter pylori genetic diversification in the Mongolian gerbil model
Author / Creator:Beckett, Amber C. ; Loh, John T. ; Chopra, Abha ; Leary, Shay ; Lin, Aung Soe ; McDonnell, Wyatt J. ; Dixon, Beverly R.E.A. ; Noto, Jennifer M. ; Israel, Dawn A. ; Peek Jr, Richard M. ; Mallal, Simon ; Algood, Holly M. Scott ; Cover, Timothy L.
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2018-05, Vol.6, p.e4803-e4803, Article e4803
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ArticlesPeer ReviewedFull Text
Erratum to: HIV integration sites in latently infected cell lines: evidence of ongoing replication
Author / Creator:Symons, Jori ; Chopra, Abha ; Malatinkova, Eva ; De Spiegelaere, Ward ; Leary, Shay ; Cooper, Don ; Abana, Chike O. ; Rhodes, Ajantha ; Rezaei, Simin D. ; Vandekerckhove, Linos ; Mallal, Simon ; Lewin, Sharon R. ; Cameron, Paul U.
Publisher:England: BioMed Central Ltd
Journal title:Retrovirology, 2017-03, Vol.14 (1), p.23-23, Article 23
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ArticlesPeer ReviewedFull Text
Variants of HCMV UL18 Sequenced Directly from Clinical Specimens Associate with Antibody and T-Cell Responses to HCMV
Author / Creator:Waters, Shelley ; Lee, Silvia ; Ariyanto, Ibnu ; Leary, Shay ; Munyard, Kylie ; Gaudieri, Silvana ; Irish, Ashley ; Allcock, Richard J. N. ; Price, Patricia
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2022-10, Vol.23 (21), p.12911
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ArticlesFull Text
Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level
Author / Creator:Leary, Shay ; Gaudieri, Silvana ; Parker, Matthew D ; Chopra, Abha ; James, Ian ; Pakala, Suman ; Alves, Eric ; Mina, John ; Lindsey, Benjamin B ; Keeley, Alexander J ; Rowland-Jones, Sarah L ; Swanson, Maurice ; Ostrov, David A ; Bubenik, Jodi L ; Das, Suman ; Sidney, John ; Sette, Alessandro ; Covid-19 Genomics Consortium Uk ; De Silva, Thushan I ; Phillips, Elizabeth Jane ; Mallal, Simon
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-08
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ArticlesPeer ReviewedFull Text
Sequencing of the Viral UL111a Gene Directly from Clinical Specimens Reveals Variants of HCMV-Encoded IL-10 That Are Associated with Altered Immune Responses to HCMV
Author / Creator:Waters, Shelley ; Lee, Silvia ; Ariyanto, Ibnu ; Kresoje, Nina ; Leary, Shay ; Munyard, Kylie ; Gaudieri, Silvana ; Irish, Ashley ; Keil, Anthony D. ; Allcock, Richard J. N. ; Price, Patricia
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2022-04, Vol.23 (9), p.4644
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ArticlesPeer ReviewedFull Text
Pan-genomic analyses identify key Helicobacter pylori pathogenic loci modified by carcinogenic host microenvironments
Author / Creator:Noto, Jennifer M ; Chopra, Abha ; Loh, John T ; Romero-Gallo, Judith ; Piazuelo, M Blanca ; Watson, Mark ; Leary, Shay ; Beckett, Amber C ; Wilson, Keith T ; Cover, Timothy L ; Mallal, Simon ; Israel, Dawn A ; Peek, Richard M
Publisher:England: BMJ Publishing Group
Journal title:Gut, 2018-10, Vol.67 (10), p.1793-1804
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ArticlesPeer ReviewedFull Text
Influence of Transmitted Virus on the Host's Immune Response: A Case Study
Author / Creator:Merani, Shahzma ; Lucas, Michaela ; Deshpande, Pooja ; Pfafferott, Katja ; Chopra, Abha ; Cooper, Don ; Leary, Shay ; Luciani, Fabio ; Gaudieri, Silvana
Publisher:United States: Mary Ann Liebert, Inc
Journal title:Viral immunology, 2017-09, Vol.30 (7), p.533-541
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ArticlesPeer ReviewedFull Text
Identifying Patient-Specific Epstein-Barr Nuclear Antigen-1 Genetic Variation and Potential Autoreactive Targets Relevant to Multiple Sclerosis Pathogenesis: e0147567
Author / Creator:Tschochner, Monika ; Leary, Shay ; Cooper, Don ; Strautins, Kaija ; Chopra, Abha ; Clark, Hayley ; Choo, Linda ; Dunn, David ; James, Ian ; Carroll, William M
Journal title:PloS one, 2016-02, Vol.11 (2)
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ArticlesFull Text
Altered Subgenomic RNA Expression in SARS-CoV-2 B.1.1.7 Infections
Author / Creator:Parker, Matthew D ; Lindsey, Benjamin B ; Shah, Dhruv R ; Hsu, Sharon ; Keeley, Alexander J ; Partridge, David G ; Leary, Shay ; Cope, Alison ; State, Amy ; Johnson, Katie ; Nasar, Ali ; Raghei, Rasha ; Heffer, Joe ; Smith, Nikki ; Zhang, Peijun ; Gallis, Marta ; Louka, Stavroula F ; Hornsby, Hailey R ; Whiteley, Max ; Foulkes, Benjamin H ; Christou, Stella ; Wolverson, Paige ; Pohare, Manoj ; Hansford, Samantha E ; Green, Luke R ; Evans, Cariad ; Raza, Mohammad ; Wang, Dennis ; Gaudieri, Silvana ; Mallal, Simon ; The Covid-19 Genomics Uk (Cog-Uk) Consortium ; De Silva, Thushan I
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-03
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ArticlesFull Text
periscope: sub-genomic RNA identification in SARS-CoV-2 Genomic Sequencing Data
Author / Creator:Parker, Matthew D ; Lindsey, Benjamin B ; Leary, Shay ; Gaudieri, Silvana ; Chopra, Abha ; Wyles, Matthew ; Angyal, Adrienn ; Green, Luke R ; Parsons, Paul ; Tucker, Rachel M ; Brown, Rebecca ; Groves, Danielle ; Johnson, Katie ; Carrilero, Laura ; Heffer, Joe ; Partridge, David G ; Evans, Cariad ; Raza, Mohammad ; Keeley, Alexander J ; Smith, Nikki ; Ana Da Silva Filipe ; Shepherd, James G ; Davis, Chris ; Bennett, Sahan ; Kohl, Alain ; Aranday-Cortes, Elihu ; Tong, Lily ; Nichols, Jenna ; Thomson, Emma C ; The Covid-19 Genomics Uk (Cog-Uk) Consortium ; Wang, Dennis ; Mallal, Simon ; De Silva, Thushan I
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-11
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Newspaper ArticlesFull Text
Kathleen McGahan Is Wed
Publisher:New York, N.Y: New York Times Company
Journal title:The New York times, 1989-11-05
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HIV integration sites in latently infected cell lines: evidence of ongoing replication

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Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV

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Adaptation to HLA-associated immune pressure over the course of HIV infection and in circulating HIV-1 strains

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Identifying Patient-Specific Epstein-Barr Nuclear Antigen-1 Genetic Variation and Potential Autoreactive Targets Relevant to Multiple Sclerosis Pathogenesis

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Abacavir inhibits but does not cause self-reactivity to HLA-B57:01-restricted EBV specific T cell receptors

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Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections

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Helicobacter pylori genetic diversification in the Mongolian gerbil model

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Erratum to: HIV integration sites in latently infected cell lines: evidence of ongoing replication

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Variants of HCMV UL18 Sequenced Directly from Clinical Specimens Associate with Antibody and T-Cell Responses to HCMV

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Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level

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Sequencing of the Viral UL111a Gene Directly from Clinical Specimens Reveals Variants of HCMV-Encoded IL-10 That Are Associated with Altered Immune Responses to HCMV

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Pan-genomic analyses identify key Helicobacter pylori pathogenic loci modified by carcinogenic host microenvironments

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Influence of Transmitted Virus on the Host's Immune Response: A Case Study

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Identifying Patient-Specific Epstein-Barr Nuclear Antigen-1 Genetic Variation and Potential Autoreactive Targets Relevant to Multiple Sclerosis Pathogenesis: e0147567

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Altered Subgenomic RNA Expression in SARS-CoV-2 B.1.1.7 Infections

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periscope: sub-genomic RNA identification in SARS-CoV-2 Genomic Sequencing Data

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Kathleen McGahan Is Wed

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