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ArticlesPeer ReviewedFull Text
A benchmark for RNA-seq deconvolution analysis under dynamic testing environments
Author / Creator:Jin, Haijing ; Liu, Zhandong
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-04, Vol.22 (1), p.102-102, Article 102
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ArticlesPeer ReviewedFull Text
Stress detection using deep neural networks
Author / Creator:Li, Russell ; Liu, Zhandong
Publisher:England: BioMed Central Ltd
Journal title:BMC medical informatics and decision making, 2020-12, Vol.20 (S11), p.285-285, Article 285
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Impacts of Steel-Slag-Based Silicate Fertilizer on Soil Acidity and Silicon Availability and Metals-Immobilization in a Paddy Soil
Author / Creator:Ning, Dongfeng ; Liang, Yongchao ; Liu, Zhandong ; Xiao, Junfu ; Duan, Aiwang
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-12, Vol.11 (12), p.e0168163
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ArticlesPeer ReviewedFull Text
Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss
Author / Creator:Liu, Chaozhong ; Wang, Linhua ; Liu, Zhandong
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2023-01, Vol.24 (1), p.5-22, Article 5
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ArticlesPeer ReviewedFull Text
Region-specific denoising identifies spatial co-expression patterns and intra-tissue heterogeneity in spatially resolved transcriptomics data
Author / Creator:Wang, Linhua ; Maletic-Savatic, Mirjana ; Liu, Zhandong
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-11, Vol.13 (1), p.6912-6912, Article 6912
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ArticlesPeer ReviewedFull Text
Correction: Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss
Author / Creator:Liu, Chaozhong ; Wang, Linhua ; Liu, Zhandong
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2023-03, Vol.24 (1), p.123-123, Article 123
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ArticlesPeer ReviewedFull Text
Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
Author / Creator:Ma, Zaijun ; Wang, Hui ; Cai, Yuping ; Wang, Han ; Niu, Kongyan ; Wu, Xiaofen ; Ma, Huanhuan ; Yang, Yun ; Tong, Wenhua ; Liu, Feng ; Liu, Zhandong ; Zhang, Yaoyang ; Liu, Rui ; Zhu, Zheng-Jiang ; Liu, Nan
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2018-05, Vol.7
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ArticlesPeer ReviewedFull Text
Reversal of phenotypes in MECP2 duplication mice using genetic rescue or antisense oligonucleotides
Author / Creator:Sztainberg, Yehezkel ; Chen, Hong-mei ; Swann, John W. ; Hao, Shuang ; Tang, Bin ; Wu, Zhenyu ; Tang, Jianrong ; Wan, Ying-Wooi ; Liu, Zhandong ; Rigo, Frank ; Zoghbi, Huda Y.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2015-12, Vol.528 (7580), p.123-126
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ArticlesPeer ReviewedFull Text
Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors
Author / Creator:Patel, Akash J. ; Wan, Ying-Wooi ; Al-Ouran, Rami ; Revelli, Jean-Pierre ; Cardenas, Maria F. ; Oneissi, Mazen ; Xi, Liu ; Jalali, Ali ; Magnotti, John F. ; Muzny, Donna M. ; Doddapaneni, HarshaVardhan ; Sebastian, Sherly ; Heck, Kent A. ; Goodman, J. Clay ; Gopinath, Shankar P. ; Liu, Zhandong ; Rao, Ganesh ; Plon, Sharon E. ; Yoshor, Daniel ; Wheeler, David A. ; Zoghbi, Huda Y. ; Klisch, Tiemo J.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2019-10, Vol.116 (43), p.21715-21726
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ArticlesPeer ReviewedFull Text
In situ stabilization of heavy metals in multiple-metal contaminated paddy soil using different steel slag-based silicon fertilizer
Author / Creator:Ning, Dongfeng ; Liang, Yongchao ; Song, Alin ; Duan, Aiwang ; Liu, Zhandong
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Environmental science and pollution research international, 2016-12, Vol.23 (23), p.23638-23647
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An autism-linked missense mutation in SHANK3 reveals the modularity of Shank3 function
Author / Creator:Wang, Li ; Pang, Kaifang ; Han, Kihoon ; Adamski, Carolyn J. ; Wang, Wei ; He, Lingjie ; Lai, Jason K. ; Bondar, Vitaliy V ; Duman, Joseph G. ; Richman, Ronald ; Tolias, Kimberley F. ; Barth, Patrick ; Palzkill, Timothy ; Liu, Zhandong ; Holder, J. Lloyd ; Zoghbi, Huda Y.
Publisher:London: Nature Publishing Group UK
Journal title:Molecular psychiatry, 2020-10, Vol.25 (10), p.2534-2555
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ArticlesPeer ReviewedFull Text
Disease-related gene module detection based on a multi-label propagation clustering algorithm
Author / Creator:Jiang, Xue ; Zhang, Han ; Quan, Xiongwen ; Liu, Zhandong ; Yin, Yanbin
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-05, Vol.12 (5), p.e0178006
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ArticlesPeer ReviewedFull Text
Tau polarizes an aging transcriptional signature to excitatory neurons and glia
Author / Creator:Wu, Timothy ; Deger, Jennifer M ; Ye, Hui ; Guo, Caiwei ; Dhindsa, Justin ; Pekarek, Brandon T ; Al-Ouran, Rami ; Liu, Zhandong ; Al-Ramahi, Ismael ; Botas, Juan ; Shulman, Joshua M
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2023-05, Vol.12
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ArticlesPeer ReviewedFull Text
Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
Author / Creator:Pohodich, Amy E ; Yalamanchili, Hari ; Raman, Ayush T ; Wan, Ying-Wooi ; Gundry, Michael ; Hao, Shuang ; Jin, Haijing ; Tang, Jianrong ; Liu, Zhandong ; Zoghbi, Huda Y
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2018-03, Vol.7
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ArticlesPeer ReviewedFull Text
Digital sorting of complex tissues for cell type-specific gene expression profiles
Author / Creator:Zhong, Yi ; Wan, Ying-Wooi ; Pang, Kaifang ; Chow, Lionel ML ; Liu, Zhandong
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2013-03, Vol.14 (1), p.89-89, Article 89
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ArticlesPeer ReviewedFull Text
Downregulation of glial genes involved in synaptic function mitigates Huntington's disease pathogenesis
Author / Creator:Onur, Tarik Seref ; Laitman, Andrew ; Zhao, He ; Keyho, Ryan ; Kim, Hyemin ; Wang, Jennifer ; Mair, Megan ; Wang, Huilan ; Li, Lifang ; Perez, Alma ; de Haro, Maria ; Wan, Ying-Wooi ; Allen, Genevera ; Lu, Boxun ; Al-Ramahi, Ismael ; Liu, Zhandong ; Botas, Juan
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2021-04, Vol.10
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ArticlesPeer ReviewedFull Text
Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome
Author / Creator:Lavery, Laura A ; Ure, Kerstin ; Wan, Ying-Wooi ; Luo, Chongyuan ; Trostle, Alexander J ; Wang, Wei ; Jin, Haijing ; Lopez, Joanna ; Lucero, Jacinta ; Durham, Mark A ; Castanon, Rosa ; Nery, Joseph R ; Liu, Zhandong ; Goodell, Margaret ; Ecker, Joseph R ; Behrens, M Margarita ; Zoghbi, Huda Y
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2020-03, Vol.9
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ArticlesPeer ReviewedFull Text
A cross-sectional study exploring the relationship between symptoms of anxiety/depression and P50 sensory gating in adult patients diagnosed with chronic fatigue syndrome/myalgic encephalomyelitis
Author / Creator:Liu, Xinyi ; Liu, Sitong ; Ren, Runtao ; Wang, Xue ; Han, Chunyu ; Liu, Zhandong
Publisher:Switzerland: Frontiers Research Foundation
Journal title:Frontiers in neuroscience, 2024-01, Vol.17, p.1286340-1286340
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Disruption of the ATXN1–CIC complex causes a spectrum of neurobehavioral phenotypes in mice and humans
Author / Creator:Lu, Hsiang-Chih ; Tan, Qiumin ; Rousseaux, Maxime W C ; Wang, Wei ; Kim, Ji-Yoen ; Richman, Ronald ; Wan, Ying-Wooi ; Yeh, Szu-Ying ; Patel, Jay M ; Liu, Xiuyun ; Lin, Tao ; Lee, Yoontae ; Fryer, John D ; Han, Jing ; Chahrour, Maria ; Finnell, Richard H ; Lei, Yunping ; Zurita-Jimenez, Maria E ; Ahimaz, Priyanka ; Anyane-Yeboa, Kwame ; Van Maldergem, Lionel ; Lehalle, Daphne ; Jean-Marcais, Nolwenn ; Mosca-Boidron, Anne-Laure ; Thevenon, Julien ; Cousin, Margot A ; Bro, Della E ; Lanpher, Brendan C ; Klee, Eric W ; Alexander, Nora ; Bainbridge, Matthew N ; Orr, Harry T ; Sillitoe, Roy V ; Ljungberg, M Cecilia ; Liu, Zhandong ; Schaaf, Christian P ; Zoghbi, Huda Y
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2017-04, Vol.49 (4), p.527-536
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Loss of function of NCOR1 and NCOR2 impairs memory through a novel GABAergic hypothalamus–CA3 projection
Author / Creator:Zhou, Wenjun ; He, Yanlin ; Rehman, Atteeq U ; Kong, Yan ; Hong, Sungguan ; Ding, Guolian ; Yalamanchili, Hari Krishna ; Wan, Ying-Wooi ; Paul, Basil ; Wang, Chuhan ; Gong, Yingyun ; Zhou, Wenxian ; Liu, Hao ; Dean, John ; Scalais, Emmanuel ; O’Driscoll, Mary ; Morton, Jenny E. V ; Hou, Xinguo ; Wu, Qi ; Tong, Qingchun ; Liu, Zhandong ; Liu, Pengfei ; Xu, Yong ; Sun, Zheng
Publisher:New York: Nature Publishing Group US
Journal title:Nature neuroscience, 2019-02, Vol.22 (2), p.205-217
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A benchmark for RNA-seq deconvolution analysis under dynamic testing environments

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Stress detection using deep neural networks

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Impacts of Steel-Slag-Based Silicate Fertilizer on Soil Acidity and Silicon Availability and Metals-Immobilization in a Paddy Soil

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Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss

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Region-specific denoising identifies spatial co-expression patterns and intra-tissue heterogeneity in spatially resolved transcriptomics data

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Correction: Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss

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Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila

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Reversal of phenotypes in MECP2 duplication mice using genetic rescue or antisense oligonucleotides

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Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors

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In situ stabilization of heavy metals in multiple-metal contaminated paddy soil using different steel slag-based silicon fertilizer

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An autism-linked missense mutation in SHANK3 reveals the modularity of Shank3 function

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Disease-related gene module detection based on a multi-label propagation clustering algorithm

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Tau polarizes an aging transcriptional signature to excitatory neurons and glia

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Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity

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Digital sorting of complex tissues for cell type-specific gene expression profiles

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Downregulation of glial genes involved in synaptic function mitigates Huntington's disease pathogenesis

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Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome

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A cross-sectional study exploring the relationship between symptoms of anxiety/depression and P50 sensory gating in adult patients diagnosed with chronic fatigue syndrome/myalgic encephalomyelitis

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Disruption of the ATXN1–CIC complex causes a spectrum of neurobehavioral phenotypes in mice and humans

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Loss of function of NCOR1 and NCOR2 impairs memory through a novel GABAergic hypothalamus–CA3 projection

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