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Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer’s disease
Author / Creator:Zhou, Yingyue ; Song, Wilbur M. ; Andhey, Prabhakar S. ; Swain, Amanda ; Levy, Tyler ; Miller, Kelly R. ; Poliani, Pietro L. ; Cominelli, Manuela ; Grover, Shikha ; Gilfillan, Susan ; Cella, Marina ; Ulland, Tyler K. ; Zaitsev, Konstantin ; Miyashita, Akinori ; Ikeuchi, Takeshi ; Sainouchi, Makoto ; Kakita, Akiyoshi ; Bennett, David A. ; Schneider, Julie A. ; Nichols, Michael R. ; Beausoleil, Sean A. ; Ulrich, Jason D. ; Holtzman, David M. ; Artyomov, Maxim N. ; Colonna, Marco
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2020-01, Vol.26 (1), p.131-142
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ArticlesPeer ReviewedFull Text
Platelet-derived exosomes promote neutrophil extracellular trap formation during septic shock
Author / Creator:Jiao, Yang ; Li, Weiwei ; Wang, Wei ; Tong, Xingyu ; Xia, Ran ; Fan, Jie ; Du, Jianer ; Zhang, Chengmi ; Shi, Xueyin
Publisher:London: BioMed Central
Journal title:Critical care (London, England), 2020-06, Vol.24 (1), p.380-18, Article 380
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LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury
Author / Creator:Nakamura, Shuhei ; Shigeyama, Saki ; Minami, Satoshi ; Shima, Takayuki ; Akayama, Shiori ; Matsuda, Tomoki ; Esposito, Alessandra ; Napolitano, Gennaro ; Kuma, Akiko ; Namba-Hamano, Tomoko ; Nakamura, Jun ; Yamamoto, Kenichi ; Sasai, Miwa ; Tokumura, Ayaka ; Miyamoto, Mika ; Oe, Yukako ; Fujita, Toshiharu ; Terawaki, Seigo ; Takahashi, Atsushi ; Hamasaki, Maho ; Yamamoto, Masahiro ; Okada, Yukinori ; Komatsu, Masaaki ; Nagai, Takeharu ; Takabatake, Yoshitsugu ; Xu, Haoxing ; Isaka, Yoshitaka ; Ballabio, Andrea ; Yoshimori, Tamotsu
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2020-10, Vol.22 (10), p.1252-1263
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Brain tyrosinase overexpression implicates age-dependent neuromelanin production in Parkinson’s disease pathogenesis
Author / Creator:Carballo-Carbajal, Iria ; Laguna, Ariadna ; Romero-Giménez, Jordi ; Cuadros, Thais ; Bové, Jordi ; Martinez-Vicente, Marta ; Parent, Annabelle ; Gonzalez-Sepulveda, Marta ; Peñuelas, Núria ; Torra, Albert ; Rodríguez-Galván, Beatriz ; Ballabio, Andrea ; Hasegawa, Takafumi ; Bortolozzi, Analía ; Gelpi, Ellen ; Vila, Miquel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-03, Vol.10 (1), p.973-19, Article 973
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Neutrophil extracellular traps (NETs) exacerbate severity of infant sepsis
Author / Creator:Colón, David F. ; Wanderley, Carlos W. ; Franchin, Marcelo ; Silva, Camila M. ; Hiroki, Carlos H. ; Castanheira, Fernanda V. S. ; Donate, Paula B. ; Lopes, Alexandre H. ; Volpon, Leila C. ; Kavaguti, Silvia K. ; Borges, Vanessa F. ; Speck-Hernandez, Cesar A. ; Ramalho, Fernando ; Carlotti, Ana P. ; Carmona, Fabio ; Alves-Filho, Jose C. ; Liew, Foo Y. ; Cunha, Fernando Q.
Publisher:London: BioMed Central
Journal title:Critical care (London, England), 2019-04, Vol.23 (1), p.113-13, Article 113
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Cardiac lymphatics are heterogeneous in origin and respond to injury
Author / Creator:Klotz, Linda ; Norman, Sophie ; Vieira, Joaquim Miguel ; Masters, Megan ; Rohling, Mala ; Dubé, Karina N. ; Bollini, Sveva ; Matsuzaki, Fumio ; Carr, Carolyn A. ; Riley, Paul R.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2015-06, Vol.522 (7554), p.62-67
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Microbiota-driven interleukin-17-producing cells and eosinophils synergize to accelerate multiple myeloma progression
Author / Creator:Calcinotto, Arianna ; Brevi, Arianna ; Chesi, Marta ; Ferrarese, Roberto ; Laura Garcia Perez ; Grioni, Matteo ; Kumar, Shaji ; Garbitt, Victoria M ; Sharik, Meaghen E ; Henderson, Kimberly J ; Tonon, Giovanni ; Tomura, Michio ; Miwa, Yoshihiro ; Esplugues, Enric ; Flavell, Richard A ; Huber, Samuel ; Canducci, Filippo ; Rajkumar, Vincent S ; Bergsagel, P Leif ; Bellone, Matteo
Publisher:London: Nature Publishing Group
Journal title:Nature communications, 2018-12, Vol.9, p.1-13
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Cellpose: a generalist algorithm for cellular segmentation
Author / Creator:Stringer, Carsen ; Wang, Tim ; Michaelos, Michalis ; Pachitariu, Marius
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-01, Vol.18 (1), p.100-106
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TBK1 recruitment to STING activates both IRF3 and NF-κB that mediate immune defense against tumors and viral infections
Author / Creator:Yum, Seoyun ; Li, Minghao ; Fang, Yan ; Chen, Zhijian J.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2021-04, Vol.118 (14), p.1-9
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On the mechanism of tissue-specific mRNA delivery by selective organ targeting nanoparticles
Author / Creator:Dilliard, Sean A. ; Cheng, Qiang ; Siegwart, Daniel J.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2021-12, Vol.118 (52), p.1-10
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Mst1 inhibits autophagy by promoting the interaction between Beclin1 and Bcl-2
Author / Creator:Maejima, Yasuhiro ; Kyoi, Shiori ; Zhai, Peiyong ; Liu, Tong ; Li, Hong ; Ivessa, Andreas ; Sciarretta, Sebastiano ; Del Re, Dominic P ; Zablocki, Daniela K ; Hsu, Chiao-Po ; Lim, Dae-Sik ; Isobe, Mitsuaki ; Sadoshima, Junichi
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2013-11, Vol.19 (11), p.1478-1488
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Engrams and circuits crucial for systems consolidation of a memory
Author / Creator:Kitamura, Takashi ; Ogawa, Sachie K. ; Roy, Dheeraj S. ; Okuyama, Teruhiro ; Morrissey, Mark D. ; Smith, Lillian M. ; Redondo, Roger L. ; Tonegawa, Susumu
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2017-04, Vol.356 (6333), p.73-78
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Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Author / Creator:Fang, Rongxin ; Preissl, Sebastian ; Li, Yang ; Hou, Xiaomeng ; Lucero, Jacinta ; Wang, Xinxin ; Motamedi, Amir ; Shiau, Andrew K. ; Zhou, Xinzhu ; Xie, Fangming ; Mukamel, Eran A. ; Zhang, Kai ; Zhang, Yanxiao ; Behrens, M. Margarita ; Ecker, Joseph R. ; Ren, Bing
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-02, Vol.12 (1), p.1337-15, Article 1337
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Cross-tissue organization of the fibroblast lineage
Author / Creator:Buechler, Matthew B. ; Pradhan, Rachana N. ; Krishnamurty, Akshay T. ; Cox, Christian ; Calviello, Aslihan Karabacak ; Wang, Amber W. ; Yang, Yeqing Angela ; Tam, Lucinda ; Caothien, Roger ; Roose-Girma, Merone ; Modrusan, Zora ; Arron, Joseph R. ; Bourgon, Richard ; Müller, Sören ; Turley, Shannon. J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2021-05, Vol.593 (7860), p.575-579
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A neuroanatomical basis for electroacupuncture to drive the vagal–adrenal axis
Author / Creator:Liu, Shenbin ; Wang, Zhifu ; Su, Yangshuai ; Qi, Lu ; Yang, Wei ; Fu, Mingzhou ; Jing, Xianghong ; Wang, Yanqing ; Ma, Qiufu
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2021-10, Vol.598 (7882), p.641-645
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Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder
Author / Creator:Chen, Qi ; Yan, Menghong ; Cao, Zhonghong ; Li, Xin ; Zhang, Yunfang ; Shi, Junchao ; Feng, Gui-hai ; Peng, Hongying ; Zhang, Xudong ; Zhang, Ying ; Qian, Jingjing ; Duan, Enkui ; Zhai, Qiwei ; Zhou, Qi
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2016-01, Vol.351 (6271), p.397-400
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Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
Author / Creator:Biancalani, Tommaso ; Scalia, Gabriele ; Buffoni, Lorenzo ; Avasthi, Raghav ; Lu, Ziqing ; Sanger, Aman ; Tokcan, Neriman ; Vanderburg, Charles R. ; Segerstolpe, Åsa ; Zhang, Meng ; Avraham-Davidi, Inbal ; Vickovic, Sanja ; Nitzan, Mor ; Ma, Sai ; Subramanian, Ayshwarya ; Lipinski, Michal ; Buenrostro, Jason ; Brown, Nik Bear ; Fanelli, Duccio ; Zhuang, Xiaowei ; Macosko, Evan Z. ; Regev, Aviv
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-11, Vol.18 (11), p.1352-1362
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Lysosome activation clears aggregates and enhances quiescent neural stem cell activation during aging
Author / Creator:Leeman, Dena S. ; Hebestreit, Katja ; Ruetz, Tyson ; Webb, Ashley E. ; McKay, Andrew ; Pollina, Elizabeth A. ; Dulken, Ben W. ; Zhao, Xiaoai ; Yeo, Robin W. ; Ho, Theodore T. ; Mahmoudi, Salah ; Devarajan, Keerthana ; Passegué, Emmanuelle ; Rando, Thomas A. ; Frydman, Judith ; Brunet, Anne
Publisher:United States: The American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2018-03, Vol.359 (6381), p.1277-1283
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ArticlesPeer ReviewedFull Text
DeepLabCut: markerless pose estimation of user-defined body parts with deep learning
Author / Creator:Mathis, Alexander ; Mamidanna, Pranav ; Cury, Kevin M. ; Abe, Taiga ; Murthy, Venkatesh N. ; Mathis, Mackenzie Weygandt ; Bethge, Matthias
Publisher:New York: Nature Publishing Group US
Journal title:Nature neuroscience, 2018-09, Vol.21 (9), p.1281-1289
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Tissue signals imprint ILC2 identity with anticipatory function
Author / Creator:Ricardo-Gonzalez, Roberto R. ; Van Dyken, Steven J. ; Schneider, Christoph ; Lee, Jinwoo ; Nussbaum, Jesse C. ; Liang, Hong-Erh ; Vaka, Dedeepya ; Eckalbar, Walter L. ; Molofsky, Ari B. ; Erle, David J. ; Locksley, Richard M.
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2018-10, Vol.19 (10), p.1093-1099
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Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer’s disease

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Platelet-derived exosomes promote neutrophil extracellular trap formation during septic shock

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LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury

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Brain tyrosinase overexpression implicates age-dependent neuromelanin production in Parkinson’s disease pathogenesis

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Neutrophil extracellular traps (NETs) exacerbate severity of infant sepsis

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Cardiac lymphatics are heterogeneous in origin and respond to injury

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Microbiota-driven interleukin-17-producing cells and eosinophils synergize to accelerate multiple myeloma progression

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Cellpose: a generalist algorithm for cellular segmentation

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TBK1 recruitment to STING activates both IRF3 and NF-κB that mediate immune defense against tumors and viral infections

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On the mechanism of tissue-specific mRNA delivery by selective organ targeting nanoparticles

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Mst1 inhibits autophagy by promoting the interaction between Beclin1 and Bcl-2

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Engrams and circuits crucial for systems consolidation of a memory

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Comprehensive analysis of single cell ATAC-seq data with SnapATAC

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Cross-tissue organization of the fibroblast lineage

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A neuroanatomical basis for electroacupuncture to drive the vagal–adrenal axis

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Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder

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Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

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Lysosome activation clears aggregates and enhances quiescent neural stem cell activation during aging

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DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

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Tissue signals imprint ILC2 identity with anticipatory function

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