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Reference EntriesFull Text
Satija, Rahul
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: SAR-SOK, 2022, p.9987-9987
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Satija, Rahul
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: RA-SAU, 2021, p.9954-9954
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ArticlesPeer ReviewedFull Text
Integrative single-cell analysis
Author / Creator:Stuart, Tim ; Satija, Rahul
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2019-05, Vol.20 (5), p.257-272
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ArticlesPeer ReviewedFull Text
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
Author / Creator:Hafemeister, Christoph ; Satija, Rahul
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-12, Vol.20 (1), p.296-296, Article 296
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Comparison and evaluation of statistical error models for scRNA-seq
Author / Creator:Choudhary, Saket ; Satija, Rahul
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2022-01, Vol.23 (1), p.27-27, Article 27
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The technological landscape and applications of single-cell multi-omics
Publisher:London: Nature Publishing Group
Journal title:Nature reviews. Molecular cell biology, 2023-10, Vol.24 (10), p.695-713
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ArticlesPeer ReviewedFull Text
Single-cell chromatin state analysis with Signac
Author / Creator:Stuart, Tim ; Srivastava, Avi ; Madad, Shaista ; Lareau, Caleb A. ; Satija, Rahul
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-11, Vol.18 (11), p.1333-1341
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ArticlesPeer ReviewedFull Text
Integrating single-cell transcriptomic data across different conditions, technologies, and species
Author / Creator:Butler, Andrew ; Hoffman, Paul ; Smibert, Peter ; Papalexi, Efthymia ; Satija, Rahul
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2018-06, Vol.36 (5), p.411-420
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ArticlesPeer ReviewedFull Text
Erratum: Strength in numbers from integrated single-cell neuroscience
Author / Creator:Satija, Rahul
Publisher:New York: Springer New York
Journal title:Nature biotechnology, 2018-09, Vol.36 (9), p.899-899
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Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells
Author / Creator:Mimitou, Eleni P. ; Cheng, Anthony ; Montalbano, Antonino ; Hao, Stephanie ; Stoeckius, Marlon ; Legut, Mateusz ; Roush, Timothy ; Herrera, Alberto ; Papalexi, Efthymia ; Ouyang, Zhengqing ; Satija, Rahul ; Sanjana, Neville E. ; Koralov, Sergei B. ; Smibert, Peter
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2019-05, Vol.16 (5), p.409-412
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Dictionary learning for integrative, multimodal and scalable single-cell analysis
Author / Creator:Hao, Yuhan ; Stuart, Tim ; Kowalski, Madeline H. ; Choudhary, Saket ; Hoffman, Paul ; Hartman, Austin ; Srivastava, Avi ; Molla, Gesmira ; Madad, Shaista ; Fernandez-Granda, Carlos ; Satija, Rahul
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2024-02, Vol.42 (2), p.293-304
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ArticlesPeer ReviewedFull Text
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells
Author / Creator:Mimitou, Eleni P. ; Lareau, Caleb A. ; Chen, Kelvin Y. ; Zorzetto-Fernandes, Andre L. ; Hao, Yuhan ; Takeshima, Yusuke ; Luo, Wendy ; Huang, Tse-Shun ; Yeung, Bertrand Z. ; Papalexi, Efthymia ; Thakore, Pratiksha I. ; Kibayashi, Tatsuya ; Wing, James Badger ; Hata, Mayu ; Satija, Rahul ; Nazor, Kristopher L. ; Sakaguchi, Shimon ; Ludwig, Leif S. ; Sankaran, Vijay G. ; Regev, Aviv ; Smibert, Peter
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2021-10, Vol.39 (10), p.1246-1258
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ArticlesPeer ReviewedFull Text
Spatial reconstruction of single-cell gene expression data
Author / Creator:Satija, Rahul ; Farrell, Jeffrey A ; Gennert, David ; Schier, Alexander F ; Regev, Aviv
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2015-05, Vol.33 (5), p.495-502
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ArticlesPeer ReviewedFull Text
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Author / Creator:Stoeckius, Marlon ; Zheng, Shiwei ; Houck-Loomis, Brian ; Hao, Stephanie ; Yeung, Bertrand Z. ; Mauck, William M. ; Smibert, Peter ; Satija, Rahul
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-12, Vol.19 (1), p.224-224, Article 224
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ArticlesPeer ReviewedFull Text
Molecular transitions in early progenitors during human cord blood hematopoiesis
Author / Creator:Zheng, Shiwei ; Papalexi, Efthymia ; Butler, Andrew ; Stephenson, William ; Satija, Rahul
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2018-03, Vol.14 (3), p.e8041-n/a
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ArticlesPeer ReviewedFull Text
Developmental diversification of cortical inhibitory interneurons
Author / Creator:Mayer, Christian ; Hafemeister, Christoph ; Bandler, Rachel C. ; Machold, Robert ; Batista Brito, Renata ; Jaglin, Xavier ; Allaway, Kathryn ; Butler, Andrew ; Fishell, Gord ; Satija, Rahul
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2018-03, Vol.555 (7697), p.457-462
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ArticlesPeer ReviewedFull Text
Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput
Author / Creator:Gierahn, Todd M ; Wadsworth, Marc H ; Hughes, Travis K ; Bryson, Bryan D ; Butler, Andrew ; Satija, Rahul ; Fortune, Sarah ; Love, J Christopher ; Shalek, Alex K
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2017-04, Vol.14 (4), p.395-398
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ArticlesPeer ReviewedFull Text
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
Author / Creator:Villani, Alexandra-Chloé ; Satija, Rahul ; Reynolds, Gary ; Sarkizova, Siranush ; Shekhar, Karthik ; Fletcher, James ; Griesbeck, Morgane ; Butler, Andrew ; Zheng, Shiwei ; Lazo, Suzan ; Jardine, Laura ; Dixon, David ; Stephenson, Emily ; Nilsson, Emil ; Grundberg, Ida ; McDonald, David ; Filby, Andrew ; Li, Weibo ; De Jager, Philip L. ; Rozenblatt-Rosen, Orit ; Lane, Andrew A. ; Haniffa, Muzlifah ; Regev, Aviv ; Hacohen, Nir
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2017-04, Vol.356 (6335), p.283-283
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A single-cell transcriptional roadmap for cardiopharyngeal fate diversification
Author / Creator:Wang, Wei ; Niu, Xiang ; Stuart, Tim ; Jullian, Estelle ; Mauck, William M. ; Kelly, Robert G. ; Satija, Rahul ; Christiaen, Lionel
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2019-06, Vol.21 (6), p.674-686
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The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
Author / Creator:Snyder, Michael P. ; Lin, Shin ; Posgai, Amanda ; Atkinson, Mark ; Regev, Aviv ; Rood, Jennifer ; Rozenblatt-Rosen, Orit ; Gaffney, Leslie ; Hupalowska, Anna ; Satija, Rahul ; Gehlenborg, Nils ; Shendure, Jay ; Laskin, Julia ; Harbury, Pehr ; Nystrom, Nicholas A. ; Silverstein, Jonathan C. ; Bar-Joseph, Ziv ; Zhang, Kun ; Börner, Katy ; Lin, Yiing ; Conroy, Richard ; Procaccini, Dena ; Roy, Ananda L. ; Pillai, Ajay ; Brown, Marishka ; Galis, Zorina S. ; Cai, Long ; Trapnell, Cole ; Jackson, Dana ; Nolan, Garry ; Greenleaf, William James ; Plevritis, Sylvia ; Ahadi, Sara ; Nevins, Stephanie A. ; Lee, Hayan ; Schuerch, Christian Martijn ; Black, Sarah ; Venkataraaman, Vishal Gautham ; Esplin, Ed ; Horning, Aaron ; Bahmani, Amir ; Sun, Xin ; Jain, Sanjay ; Hagood, James ; Pryhuber, Gloria ; Kharchenko, Peter ; Bodenmiller, Bernd ; Brusko, Todd ; Clare-Salzler, Michael ; Nick, Harry ; Otto, Kevin ; Wasserfall, Clive ; Jorgensen, Marda ; Brusko, Maigan ; Maffioletti, Sergio ; Caprioli, Richard M. ; Spraggins, Jeffrey M. ; Gutierrez, Danielle ; Patterson, Nathan Heath ; Neumann, Elizabeth K. ; Harris, Raymond ; deCaestecker, Mark ; Fogo, Agnes B. ; van de Plas, Raf ; Lau, Ken ; Yuan, Guo-Cheng ; Zhu, Qian ; Dries, Ruben ; Yin, Peng ; Saka, Sinem K. ; Kishi, Jocelyn Y. ; Wang, Yu ; Goldaracena, Isabel ; Ye, DongHye ; Burnum-Johnson, Kristin E. ; Piehowski, Paul D. ; Ansong, Charles ; Zhu, Ying ; Desai, Tushar ; Mulye, Jay ; Chou, Peter ; Nagendran, Monica ; Teichmann, Sarah A. ; Paten, Benedict ; Murphy, Robert F. ; Ma, Jian ; Kiselev, Vladimir Yu ; Kingsford, Carl ; Ricarte, Allyson ; Keays, Maria ; Akoju, Sushma A. ; Ruffalo, Matthew ; Vella, Margaret ; McCallum, Chuck ; Cross, Leonard E. ; Friedman, Samuel H. ; Heiland, Randy ; Herr, Bruce ; Macklin, Paul ; Quardokus, Ellen M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2019-10, Vol.574 (7777), p.187-192
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Satija, Rahul

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Satija, Rahul

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Integrative single-cell analysis

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Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

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Comparison and evaluation of statistical error models for scRNA-seq

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The technological landscape and applications of single-cell multi-omics

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Single-cell chromatin state analysis with Signac

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

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Erratum: Strength in numbers from integrated single-cell neuroscience

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Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells

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Dictionary learning for integrative, multimodal and scalable single-cell analysis

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Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

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Spatial reconstruction of single-cell gene expression data

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Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics

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Molecular transitions in early progenitors during human cord blood hematopoiesis

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Developmental diversification of cortical inhibitory interneurons

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Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

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Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

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A single-cell transcriptional roadmap for cardiopharyngeal fate diversification

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The human body at cellular resolution: the NIH Human Biomolecular Atlas Program

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