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Conserved transcriptomic profile between mouse and human colitis allows unsupervised patient stratification
Author / Creator:Czarnewski, Paulo ; Parigi, Sara M. ; Sorini, Chiara ; Diaz, Oscar E. ; Das, Srustidhar ; Gagliani, Nicola ; Villablanca, Eduardo J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-06, Vol.10 (1), p.2892-11, Article 2892
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The spatial transcriptomic landscape of the healing mouse intestine following damage
Author / Creator:Parigi, Sara M. ; Larsson, Ludvig ; Das, Srustidhar ; Ramirez Flores, Ricardo O. ; Frede, Annika ; Tripathi, Kumar P. ; Diaz, Oscar E. ; Selin, Katja ; Morales, Rodrigo A. ; Luo, Xinxin ; Monasterio, Gustavo ; Engblom, Camilla ; Gagliani, Nicola ; Saez-Rodriguez, Julio ; Lundeberg, Joakim ; Villablanca, Eduardo J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-02, Vol.13 (1), p.828-16, Article 828
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Molecular and functional heterogeneity of IL-10-producing CD4+ T cells
Author / Creator:Brockmann, Leonie ; Soukou, Shiwa ; Steglich, Babett ; Czarnewski, Paulo ; Zhao, Lilan ; Wende, Sandra ; Bedke, Tanja ; Ergen, Can ; Manthey, Carolin ; Agalioti, Theodora ; Geffken, Maria ; Seiz, Oliver ; Parigi, Sara M. ; Sorini, Chiara ; Geginat, Jens ; Fujio, Keishi ; Jacobs, Thomas ; Roesch, Thomas ; Izbicki, Jacob R. ; Lohse, Ansgar W. ; Flavell, Richard A. ; Krebs, Christian ; Gustafsson, Jan-Ake ; Antonson, Per ; Roncarolo, Maria Grazia ; Villablanca, Eduardo J. ; Gagliani, Nicola ; Huber, Samuel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-12, Vol.9 (1), p.5457-14, Article 5457
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Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense
Author / Creator:Lassen, Kara G. ; Kuballa, Petric ; Conway, Kara L. ; Patel, Khushbu K. ; Becker, Christine E. ; Peloquin, Joanna M. ; Villablanca, Eduardo J. ; Norman, Jason M. ; Liu, Ta-Chiang ; Heath, Robert J. ; Becker, Morgan L. ; Fagbami, Lola ; Horn, Heiko ; Mercer, Johnathan ; Yilmaz, Omer H. ; Jaffe, Jacob D. ; Shamji, Alykhan F. ; Bhan, Atul K. ; Carr, Steven A. ; Daly, Mark J. ; Virgin, Herbert W. ; Schreiber, Stuart L. ; Stappenbeck, Thaddeus S. ; Xavier, Ramnik J.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (21), p.7741-7746
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Cytokines regulate the antigen-presenting characteristics of human circulating and tissue-resident intestinal ILCs
Author / Creator:Rao, Anna ; Strauss, Otto ; Kokkinou, Efthymia ; Bruchard, Mélanie ; Tripathi, Kumar P. ; Schlums, Heinrich ; Carrasco, Anna ; Mazzurana, Luca ; Konya, Viktoria ; Villablanca, Eduardo J. ; Björkström, Niklas K. ; Lindforss, Ulrik ; Spits, Hergen ; Mjösberg, Jenny
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-04, Vol.11 (1), p.2049-2049, Article 2049
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Blue-shift photoconversion of near-infrared fluorescent proteins for labeling and tracking in living cells and organisms
Author / Creator:Pennacchietti, Francesca ; Alvelid, Jonatan ; Morales, Rodrigo A. ; Damenti, Martina ; Ollech, Dirk ; Oliinyk, Olena S. ; Shcherbakova, Daria M. ; Villablanca, Eduardo J. ; Verkhusha, Vladislav V. ; Testa, Ilaria
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-12, Vol.14 (1), p.8402-8402, Article 8402
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Intestinal stroma guides monocyte differentiation to macrophages through GM-CSF
Author / Creator:Kvedaraite, Egle ; Lourda, Magda ; Mouratidou, Natalia ; Düking, Tim ; Padhi, Avinash ; Moll, Kirsten ; Czarnewski, Paulo ; Sinha, Indranil ; Xagoraris, Ioanna ; Kokkinou, Efthymia ; Damdimopoulos, Anastasios ; Weigel, Whitney ; Hartwig, Olga ; Santos, Telma E. ; Soini, Tea ; Van Acker, Aline ; Rahkonen, Nelly ; Flodström Tullberg, Malin ; Ringqvist, Emma ; Buggert, Marcus ; Jorns, Carl ; Lindforss, Ulrik ; Nordenvall, Caroline ; Stamper, Christopher T. ; Unnersjö-Jess, David ; Akber, Mira ; Nadisauskaite, Ruta ; Jansson, Jessica ; Vandamme, Niels ; Sorini, Chiara ; Grundeken, Marijke Elise ; Rolandsdotter, Helena ; Rassidakis, George ; Villablanca, Eduardo J. ; Ideström, Maja ; Eulitz, Stefan ; Arnell, Henrik ; Mjösberg, Jenny ; Henter, Jan-Inge ; Svensson, Mattias
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-02, Vol.15 (1), p.1752-1752, Article 1752
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Perfluorooctanesulfonic acid modulates barrier function and systemic T-cell homeostasis during intestinal inflammation
Author / Creator:Diaz, Oscar E. ; Sorini, Chiara ; Morales, Rodrigo A. ; Luo, Xinxin ; Frede, Annika ; Krais, Annette M. ; Chávez, Myra N. ; Wincent, Emma ; Das, Srustidhar ; Villablanca, Eduardo J.
Publisher:England: The Company of Biologists Ltd
Journal title:Disease models & mechanisms, 2021-12, Vol.14 (12), p.1
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ArticlesPeer ReviewedFull Text
Selenization of S. cerevisiae increases its protective potential in experimental autoimmune encephalomyelitis by triggering an intestinal immunomodulatory loop
Author / Creator:de Campos Fraga-Silva, Thais Fernanda ; Mimura, Luiza Ayumi Nishiyama ; de Oliveira, Larissa Ragozo Cardoso ; dos Santos Toledo, Juliana Helena ; Borim, Patrícia Aparecida ; Zorzella-Pezavento, Sofia Fernanda Gonçalvez ; Alonso, Diego Peres ; Ribolla, Paulo Eduardo Martins ; de Oliveira, Carlos Alberto Ferreira ; da Fonseca, Denise Morais ; Villablanca, Eduardo J. ; Sartori, Alexandrina
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-12, Vol.10 (1), p.22190-17, Article 22190
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Longitudinal single-cell data informs deterministic modelling of inflammatory bowel disease
Author / Creator:Kilian, Christoph ; Ulrich, Hanna ; Zouboulis, Viktor A. ; Sprezyna, Paulina ; Schreiber, Jasmin ; Landsberger, Tomer ; Büttner, Maren ; Biton, Moshe ; Villablanca, Eduardo J. ; Huber, Samuel ; Adlung, Lorenz
Publisher:London: Nature Publishing Group UK
Journal title:NPJ systems biology and applications, 2024-06, Vol.10 (1), p.69-9, Article 69
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ArticlesPeer ReviewedFull Text
β7 integrins contribute to intestinal tumor growth in mice
Author / Creator:Das, Srustidhar ; Doñas, Cristian ; Akeus, Paulina ; Quiding-Järbrink, Marianne ; Mora, J. Rodrigo ; Villablanca, Eduardo J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018, Vol.13 (9), p.e0204181-e0204181
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ArticlesPeer ReviewedFull Text
Functional genomics identifies negative regulatory nodes controlling phagocyte oxidative burst
Author / Creator:Graham, Daniel B. ; Becker, Christine E. ; Doan, Aivi ; Goel, Gautam ; Villablanca, Eduardo J. ; Knights, Dan ; Mok, Amanda ; Ng, Aylwin C.Y. ; Doench, John G. ; Root, David E. ; Clish, Clary B. ; Xavier, Ramnik J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-07, Vol.6 (1), p.7838-7838, Article 7838
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Generation of mouse-zebrafish hematopoietic tissue chimeric embryos for hematopoiesis and host-pathogen interaction studies
Author / Creator:Parada-Kusz, Margarita ; Penaranda, Cristina ; Hagedorn, Elliott J. ; Clatworthy, Anne ; Nair, Anil V. ; Henninger, Jonathan E. ; Ernst, Christoph ; Li, Brian ; Riquelme, Raquel ; Jijon, Humberto ; Villablanca, Eduardo J. ; Zon, Leonard I. ; Hung, Deborah ; Allende, Miguel L.
Publisher:England: The Company of Biologists Ltd
Journal title:Disease models & mechanisms, 2018-11, Vol.11 (11)
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Mechanisms of mucosal healing: treating inflammatory bowel disease without immunosuppression?
Author / Creator:Villablanca, Eduardo J. ; Selin, Katja ; Hedin, Charlotte R. H.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Gastroenterology & hepatology, 2022-08, Vol.19 (8), p.493-507
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Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH
Author / Creator:Borm, Lars E. ; Mossi Albiach, Alejandro ; Mannens, Camiel C. A. ; Janusauskas, Jokubas ; Özgün, Ceren ; Fernández-García, David ; Hodge, Rebecca ; Castillo, Francisca ; Hedin, Charlotte R. H. ; Villablanca, Eduardo J. ; Uhlén, Per ; Lein, Ed S. ; Codeluppi, Simone ; Linnarsson, Sten
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2023-02, Vol.41 (2), p.222-231
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Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish
Author / Creator:Gallardo, Viviana E ; Liang, Jin ; Behra, Martine ; Elkahloun, Abdel ; Villablanca, Eduardo J ; Russo, Vincenzo ; Allende, Miguel L ; Burgess, Shawn M
Publisher:England: BioMed Central Ltd
Journal title:BMC developmental biology, 2010-12, Vol.10 (1), p.120-120, Article 120
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Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system
Author / Creator:Schäfer, Philipp Sven Lars ; Dimitrov, Daniel ; Villablanca, Eduardo J. ; Saez-Rodriguez, Julio
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2024-03, Vol.25 (3), p.405-417
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Short-term dietary changes can result in mucosal and systemic immune depression
Author / Creator:Siracusa, Francesco ; Schaltenberg, Nicola ; Kumar, Yogesh ; Lesker, Till R. ; Steglich, Babett ; Liwinski, Timur ; Cortesi, Filippo ; Frommann, Laura ; Diercks, Björn-Phillip ; Bönisch, Friedericke ; Fischer, Alexander W. ; Scognamiglio, Pasquale ; Pauly, Mira J. ; Casar, Christian ; Cohen, Yotam ; Pelczar, Penelope ; Agalioti, Theodora ; Delfs, Flemming ; Worthmann, Anna ; Wahib, Ramez ; Jagemann, Bettina ; Mittrücker, Hans-Willi ; Kretz, Oliver ; Guse, Andreas H. ; Izbicki, Jakob R. ; Lassen, Kara G. ; Strowig, Till ; Schweizer, Michaela ; Villablanca, Eduardo J. ; Elinav, Eran ; Huber, Samuel ; Heeren, Joerg ; Gagliani, Nicola
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2023-09, Vol.24 (9), p.1473-1486
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ArticlesPeer ReviewedFull Text
Tumor-mediated liver X receptor-α activation inhibits CC chemokine receptor-7 expression on dendritic cells and dampens antitumor responses
Author / Creator:Villablanca, Eduardo J ; Raccosta, Laura ; Zhou, Dan ; Fontana, Raffaella ; Maggioni, Daniela ; Negro, Aurora ; Sanvito, Francesca ; Ponzoni, Maurilio ; Valentinis, Barbara ; Bregni, Marco ; Prinetti, Alessandro ; Steffensen, Knut R ; Sonnino, Sandro ; Gustafsson, Jan-Ake ; Doglioni, Claudio ; Bordignon, Claudio ; Traversari, Catia ; Russo, Vincenzo
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2010-01, Vol.16 (1), p.98-105
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Retinoic Acid and Its Role in Modulating Intestinal Innate Immunity
Author / Creator:Czarnewski, Paulo ; Das, Srustidhar ; Parigi, Sara ; Villablanca, Eduardo
Publisher:Switzerland: MDPI AG
Journal title:Nutrients, 2017-01, Vol.9 (1), p.68
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Conserved transcriptomic profile between mouse and human colitis allows unsupervised patient stratification

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The spatial transcriptomic landscape of the healing mouse intestine following damage

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Molecular and functional heterogeneity of IL-10-producing CD4+ T cells

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Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense

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Cytokines regulate the antigen-presenting characteristics of human circulating and tissue-resident intestinal ILCs

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Blue-shift photoconversion of near-infrared fluorescent proteins for labeling and tracking in living cells and organisms

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Intestinal stroma guides monocyte differentiation to macrophages through GM-CSF

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Perfluorooctanesulfonic acid modulates barrier function and systemic T-cell homeostasis during intestinal inflammation

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Selenization of S. cerevisiae increases its protective potential in experimental autoimmune encephalomyelitis by triggering an intestinal immunomodulatory loop

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Longitudinal single-cell data informs deterministic modelling of inflammatory bowel disease

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β7 integrins contribute to intestinal tumor growth in mice

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Functional genomics identifies negative regulatory nodes controlling phagocyte oxidative burst

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Generation of mouse-zebrafish hematopoietic tissue chimeric embryos for hematopoiesis and host-pathogen interaction studies

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Mechanisms of mucosal healing: treating inflammatory bowel disease without immunosuppression?

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Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH

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Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish

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Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system

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Short-term dietary changes can result in mucosal and systemic immune depression

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Tumor-mediated liver X receptor-α activation inhibits CC chemokine receptor-7 expression on dendritic cells and dampens antitumor responses

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Retinoic Acid and Its Role in Modulating Intestinal Innate Immunity

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