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21 results for Zimmerman,+Kip+D

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ArticlesPeer ReviewedFull Text
A practical solution to pseudoreplication bias in single-cell studies
Author / Creator:Zimmerman, Kip D. ; Espeland, Mark A. ; Langefeld, Carl D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-02, Vol.12 (1), p.738-738, Article 738
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Hierarchicell: an R-package for estimating power for tests of differential expression with single-cell data
Author / Creator:Zimmerman, Kip D. ; Langefeld, Carl D.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2021-05, Vol.22 (1), p.319-319, Article 319
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Reply to: A balanced measure shows superior performance of pseudobulk methods in single-cell RNA-sequencing analysis
Author / Creator:Zimmerman, Kip D. ; Evans, Ciaran ; Langefeld, Carl D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-12, Vol.13 (1), p.7852-2, Article 7852
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Assessment of label-free quantification and missing value imputation for proteomics in non-human primates
Author / Creator:Hamid, Zeeshan ; Zimmerman, Kip D. ; Guillen-Ahlers, Hector ; Li, Cun ; Nathanielsz, Peter ; Cox, Laura A. ; Olivier, Michael
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2022-07, Vol.23 (1), p.496-496, Article 496
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Single-cell expression quantitative trait loci (eQTL) analysis of SLE-risk loci in lupus patient monocytes
Author / Creator:Ghodke-Puranik, Yogita ; Jin, Zhongbo ; Zimmerman, Kip D. ; Ainsworth, Hannah C. ; Fan, Wei ; Jensen, Mark A. ; Dorschner, Jessica M. ; Vsetecka, Danielle M. ; Amin, Shreyasee ; Makol, Ashima ; Ernste, Floranne ; Osborn, Thomas ; Moder, Kevin ; Chowdhary, Vaidehi ; Langefeld, Carl D. ; Niewold, Timothy B.
Publisher:England: BioMed Central Ltd
Journal title:Arthritis research & therapy, 2021-11, Vol.23 (1), p.290-10, Article 290
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ArticlesPeer ReviewedFull Text
Integrative analysis of DNA methylation in discordant twins unveils distinct architectures of systemic sclerosis subsets
Author / Creator:Ramos, Paula S. ; Zimmerman, Kip D. ; Haddad, Sandra ; Langefeld, Carl D. ; Medsger, Thomas A. ; Feghali-Bostwick, Carol A.
Publisher:Germany: BioMed Central Ltd
Journal title:Clinical epigenetics, 2019-04, Vol.11 (1), p.58-58, Article 58
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An Isobaric Labeling Approach to Enhance Detection and Quantification of Tissue-Derived Plasma Proteins as Potential Early Disease Biomarkers
Author / Creator:Nazli, Sumaiya ; Zimmerman, Kip D. ; Riojas, Angelica M. ; Cox, Laura A. ; Olivier, Michael
Publisher:Switzerland: MDPI AG
Journal title:Biomolecules (Basel, Switzerland), 2023-01, Vol.13 (2), p.215
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Optimization of Imputation Strategies for High-Resolution Gas Chromatography–Mass Spectrometry (HR GC–MS) Metabolomics Data
Author / Creator:Ampong, Isaac ; Zimmerman, Kip D. ; Nathanielsz, Peter W. ; Cox, Laura A. ; Olivier, Michael
Publisher:Switzerland: MDPI AG
Journal title:Metabolites, 2022-05, Vol.12 (5), p.429
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Cardiac Molecular Analysis Reveals Aging‐Associated Metabolic Alterations Promoting Glycosaminoglycans Accumulation via Hexosamine Biosynthetic Pathway
Author / Creator:Grilo, Luís F. ; Zimmerman, Kip D. ; Puppala, Sobha ; Chan, Jeannie ; Huber, Hillary F. ; Li, Ge ; Jadhav, Avinash Y. L. ; Wang, Benlian ; Li, Cun ; Clarke, Geoffrey D. ; Register, Thomas C. ; Oliveira, Paulo J. ; Nathanielsz, Peter W. ; Olivier, Michael ; Pereira, Susana P. ; Cox, Laura A.
Publisher:Germany: John Wiley & Sons, Inc
Journal title:Advanced science, 2024-10, Vol.11 (38), p.e2309211-n/a
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Antifibrotic factor KLF4 is repressed by the miR-10/TFAP2A/TBX5 axis in dermal fibroblasts: insights from twins discordant for systemic sclerosis
Author / Creator:Malaab, Maya ; Renaud, Ludivine ; Takamura, Naoko ; Zimmerman, Kip D ; da Silveira, Willian A ; Ramos, Paula S ; Haddad, Sandra ; Peters-Golden, Marc ; Penke, Loka R ; Wolf, Bethany ; Hardiman, Gary ; Langefeld, Carl D ; Medsger, Thomas A ; Feghali-Bostwick, Carol A
Publisher:England: BMJ Publishing Group Ltd and European League Against Rheumatism
Journal title:Annals of the rheumatic diseases, 2022-02, Vol.81 (2), p.268-277
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miR-181a Mediates Inflammatory Gene Expression After Intracerebral Hemorrhage: An Integrated Analysis of miRNA-seq and mRNA-seq in a Swine ICH Model
Author / Creator:Walsh, Kyle B. ; Zimmerman, Kip D. ; Zhang, Xiang ; Demel, Stacie L. ; Luo, Yu ; Langefeld, Carl D. ; Wohleb, Eric ; Schulert, Grant ; Woo, Daniel ; Adeoye, Opeolu
Publisher:New York: Springer US
Journal title:Journal of molecular neuroscience, 2021-09, Vol.71 (9), p.1802-1814
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ArticlesPeer ReviewedFull Text
Moderate maternal nutrient reduction in pregnancy alters fatty acid oxidation and RNA splicing in the nonhuman primate fetal liver
Author / Creator:Zimmerman, Kip D. ; Chan, Jeannie ; Glenn, Jeremy P. ; Birnbaum, Shifra ; Li, Cun ; Nathanielsz, Peter W. ; Olivier, Michael ; Cox, Laura A.
Publisher:Cambridge, UK: Cambridge University Press
Journal title:Journal of developmental origins of health and disease, 2023-06, Vol.14 (3), p.381-388
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Nucleic Acid-Sensing and Interferon-Inducible Pathways Show Differential Methylation in MZ Twins Discordant for Lupus and Overexpression in Independent Lupus Samples: Implications for Pathogenic Mecha...
Author / Creator:Marion, Miranda C. ; Ramos, Paula S. ; Bachali, Prathyusha ; Labonte, Adam C. ; Zimmerman, Kip D. ; Ainsworth, Hannah C. ; Heuer, Sarah E. ; Robl, Robert D. ; Catalina, Michelle D. ; Kelly, Jennifer A. ; Howard, Timothy D. ; Lipsky, Peter E. ; Grammer, Amrie C. ; Langefeld, Carl D.
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2021-11, Vol.12 (12), p.1898
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TMTC2 variant associated with sensorineural hearing loss and auditory neuropathy spectrum disorder in a family dyad
Author / Creator:Guillen‐Ahlers, Hector ; Erbe, Christy B. ; Chevalier, Frédéric D. ; Montoya, Maria J. ; Zimmerman, Kip D. ; Langefeld, Carl D. ; Olivier, Michael ; Runge, Christina L.
Publisher:United States: John Wiley & Sons, Inc
Journal title:Molecular genetics & genomic medicine, 2018-07, Vol.6 (4), p.653-659
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ArticlesFull Text
Modulation of neural gene networks by estradiol in old rhesus macaque females
Author / Creator:Cervera-Juanes, Rita ; Zimmerman, Kip D ; Wilhelm, Larry ; Zhu, Dongqin ; Bodie, Jessica ; Kohama, Steven G ; Urbanski, Henryk
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2023-12
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ArticlesFull Text
Cardiac Molecular Analysis Reveals Aging-Associated Metabolic Alterations Promoting Glycosaminoglycans Accumulation Via Hexosamine Biosynthetic Pathway
Author / Creator:Grilo, Luis F ; Zimmerman, Kip D ; Puppala, Sobha ; Chan, Jeannie ; Huber, Hillary F ; Li, Ge ; Jadhav, Avinash Y L ; Wang, Benlian ; Li, Cun ; Clarke, Geoffrey David ; Register, Thomas C ; Oliveira, Paulo J ; Nathanielsz, Peter W ; Olivier, Michael ; Pereira, Susana ; Cox, Laura A
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2023-11
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The anti-fibrotic factor KLF4 is repressed by the miR-10/TFAP2A/TBX5 axis in dermal fibroblasts: insights from twins discordant for systemic sclerosis
Author / Creator:Malaab, Maya ; Renaud, Ludivine ; Takamura, Naoko ; Zimmerman, Kip D. ; da Silveira, Willian A. ; Ramos, Paula S. ; Haddad, Sandra ; Peters-Golden, Marc ; Penke, Loka R. ; Wolf, Bethany J. ; Hardiman, Gary ; Langefeld, Carl D. ; Medsger, Thomas A. ; Feghali-Bostwick, Carol A.
Journal title:Annals of the rheumatic diseases, 2021-11, Vol.81 (2), p.268-277
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ArticlesFull Text
Assessment of label-free quantification and missing value imputation for proteomics in non-human primates
Author / Creator:Hamid, Zeeshan ; Zimmerman, Kip D ; Guillen-Ahlers, Hector ; Li, Cun ; Nathanielsz, Peter ; Cox, Laura A ; Olivier, Michael
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-07
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ArticlesFull Text
Pseudoreplication bias in single-cell studies; a practical solution
Author / Creator:Zimmerman, Kip D ; Espeland, Mark A ; Langefeld, Carl D
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-01
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Genetic Landscape of Gullah African Americans
Author / Creator:Zimmerman, Kip D ; Schurr, Theodore G ; Wei-Min, Chen ; Nayak, Uma ; Mychaleckyj, Josyf C ; Queen Quet ; Moultrie, Lee H ; Divers, Jasmin ; Keene, Keith L ; Kamen, Diane L ; Gilkeson, Gary S ; Hunt, Kelly J ; Spruill, Ida J ; Fernandes, Jyotika K ; Aldrich, Melinda C ; Reich, David ; Garvey, W Timothy ; Langefeld, Carl D ; Sale, Michèle M ; Ramos, Paula S
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-10
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Showing 1 to 20 of 21 results

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A practical solution to pseudoreplication bias in single-cell studies

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Hierarchicell: an R-package for estimating power for tests of differential expression with single-cell data

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Reply to: A balanced measure shows superior performance of pseudobulk methods in single-cell RNA-sequencing analysis

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Assessment of label-free quantification and missing value imputation for proteomics in non-human primates

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Single-cell expression quantitative trait loci (eQTL) analysis of SLE-risk loci in lupus patient monocytes

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Integrative analysis of DNA methylation in discordant twins unveils distinct architectures of systemic sclerosis subsets

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An Isobaric Labeling Approach to Enhance Detection and Quantification of Tissue-Derived Plasma Proteins as Potential Early Disease Biomarkers

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Optimization of Imputation Strategies for High-Resolution Gas Chromatography–Mass Spectrometry (HR GC–MS) Metabolomics Data

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Cardiac Molecular Analysis Reveals Aging‐Associated Metabolic Alterations Promoting Glycosaminoglycans Accumulation via Hexosamine Biosynthetic Pathway

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Antifibrotic factor KLF4 is repressed by the miR-10/TFAP2A/TBX5 axis in dermal fibroblasts: insights from twins discordant for systemic sclerosis

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miR-181a Mediates Inflammatory Gene Expression After Intracerebral Hemorrhage: An Integrated Analysis of miRNA-seq and mRNA-seq in a Swine ICH Model

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Moderate maternal nutrient reduction in pregnancy alters fatty acid oxidation and RNA splicing in the nonhuman primate fetal liver

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Nucleic Acid-Sensing and Interferon-Inducible Pathways Show Differential Methylation in MZ Twins Discordant for Lupus and Overexpression in Independent Lupus Samples: Implications for Pathogenic Mecha...

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TMTC2 variant associated with sensorineural hearing loss and auditory neuropathy spectrum disorder in a family dyad

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Modulation of neural gene networks by estradiol in old rhesus macaque females

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Cardiac Molecular Analysis Reveals Aging-Associated Metabolic Alterations Promoting Glycosaminoglycans Accumulation Via Hexosamine Biosynthetic Pathway

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The anti-fibrotic factor KLF4 is repressed by the miR-10/TFAP2A/TBX5 axis in dermal fibroblasts: insights from twins discordant for systemic sclerosis

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Assessment of label-free quantification and missing value imputation for proteomics in non-human primates

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Pseudoreplication bias in single-cell studies; a practical solution

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Genetic Landscape of Gullah African Americans

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