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Select record 21
ArticlesPeer ReviewedFull Text
Imputation of ancient human genomes
Author / Creator:Sousa da Mota, Bárbara ; Rubinacci, Simone ; Cruz Dávalos, Diana Ivette ; G. Amorim, Carlos Eduardo ; Sikora, Martin ; Johannsen, Niels N. ; Szmyt, Marzena H. ; Włodarczak, Piotr ; Szczepanek, Anita ; Przybyła, Marcin M. ; Schroeder, Hannes ; Allentoft, Morten E. ; Willerslev, Eske ; Malaspinas, Anna-Sapfo ; Delaneau, Olivier
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-06, Vol.14 (1), p.3660-17, Article 3660
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Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
Author / Creator:Kajitani, Rei ; Yoshimura, Dai ; Okuno, Miki ; Minakuchi, Yohei ; Kagoshima, Hiroshi ; Fujiyama, Asao ; Kubokawa, Kaoru ; Kohara, Yuji ; Toyoda, Atsushi ; Itoh, Takehiko
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-04, Vol.10 (1), p.1702-15, Article 1702
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A hybrid approach for de novo human genome sequence assembly and phasing
Author / Creator:Mostovoy, Yulia ; Levy-Sakin, Michal ; Lam, Jessica ; Lam, Ernest T ; Hastie, Alex R ; Marks, Patrick ; Lee, Joyce ; Chu, Catherine ; Lin, Chin ; Džakula, Željko ; Cao, Han ; Schlebusch, Stephen A ; Giorda, Kristina ; Schnall-Levin, Michael ; Wall, Jeffrey D ; Kwok, Pui-Yan
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2016-07, Vol.13 (7), p.587-590
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Southeastern Asia fall armyworms are closely related to populations in Africa and India, consistent with common origin and recent migration
Author / Creator:Nagoshi, Rodney N. ; Htain, Ni Ni ; Boughton, Duncan ; Zhang, Lei ; Xiao, Yutao ; Nagoshi, Benjamin Y. ; Mota-Sanchez, David
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-01, Vol.10 (1), p.1421, Article 1421
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Discovery of beneficial haplotypes for complex traits in maize landraces
Author / Creator:Mayer, Manfred ; Hölker, Armin C. ; González-Segovia, Eric ; Bauer, Eva ; Presterl, Thomas ; Ouzunova, Milena ; Melchinger, Albrecht E. ; Schön, Chris-Carolin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-10, Vol.11 (1), p.4954-10, Article 4954
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Genome maps across 26 human populations reveal population-specific patterns of structural variation
Author / Creator:Levy-Sakin, Michal ; Pastor, Steven ; Mostovoy, Yulia ; Li, Le ; Leung, Alden K. Y. ; McCaffrey, Jennifer ; Young, Eleanor ; Lam, Ernest T. ; Hastie, Alex R. ; Wong, Karen H. Y. ; Chung, Claire Y. L. ; Ma, Walfred ; Sibert, Justin ; Rajagopalan, Ramakrishnan ; Jin, Nana ; Chow, Eugene Y. C. ; Chu, Catherine ; Poon, Annie ; Lin, Chin ; Naguib, Ahmed ; Wang, Wei-Ping ; Cao, Han ; Chan, Ting-Fung ; Yip, Kevin Y. ; Xiao, Ming ; Kwok, Pui-Yan
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-03, Vol.10 (1), p.1025-14, Article 1025
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A diploid assembly-based benchmark for variants in the major histocompatibility complex
Author / Creator:Chin, Chen-Shan ; Wagner, Justin ; Zeng, Qiandong ; Garrison, Erik ; Garg, Shilpa ; Fungtammasan, Arkarachai ; Rautiainen, Mikko ; Aganezov, Sergey ; Kirsche, Melanie ; Zarate, Samantha ; Schatz, Michael C. ; Xiao, Chunlin ; Rowell, William J. ; Markello, Charles ; Farek, Jesse ; Sedlazeck, Fritz J. ; Bansal, Vikas ; Yoo, Byunggil ; Miller, Neil ; Zhou, Xin ; Carroll, Andrew ; Barrio, Alvaro Martinez ; Salit, Marc ; Marschall, Tobias ; Dilthey, Alexander T. ; Zook, Justin M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-09, Vol.11 (1), p.4794-9, Article 4794
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Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression
Author / Creator:Greenwald, William W. ; Li, He ; Benaglio, Paola ; Jakubosky, David ; Matsui, Hiroko ; Schmitt, Anthony ; Selvaraj, Siddarth ; D’Antonio, Matteo ; D’Antonio-Chronowska, Agnieszka ; Smith, Erin N. ; Frazer, Kelly A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-03, Vol.10 (1), p.1054-17, Article 1054
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Identity-by-descent detection across 487,409 British samples reveals fine scale population structure and ultra-rare variant associations
Author / Creator:Nait Saada, Juba ; Kalantzis, Georgios ; Shyr, Derek ; Cooper, Fergus ; Robinson, Martin ; Gusev, Alexander ; Palamara, Pier Francesco
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-11, Vol.11 (1), p.6130-15, Article 6130
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ArticlesPeer ReviewedFull Text
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
Author / Creator:Selvaraj, Siddarth ; R Dixon, Jesse ; Bansal, Vikas ; Ren, Bing
Publisher:London: Nature Publishing Group UK
Journal title:Nature biotechnology, 2013-12, Vol.31 (12), p.1111-1118
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The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
Author / Creator:Adey, Andrew ; Burton, Joshua N. ; Kitzman, Jacob O. ; Hiatt, Joseph B. ; Lewis, Alexandra P. ; Martin, Beth K. ; Qiu, Ruolan ; Lee, Choli ; Shendure, Jay
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2013-08, Vol.500 (7461), p.207-211
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Haplotype-resolved genome sequencing: experimental methods and applications
Author / Creator:Snyder, Matthew W. ; Adey, Andrew ; Kitzman, Jacob O. ; Shendure, Jay
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2015-06, Vol.16 (6), p.344-358
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ArticlesPeer ReviewedFull Text
Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression
Author / Creator:Bosse, Mirte ; Megens, Hendrik-Jan ; Frantz, Laurent A. F. ; Madsen, Ole ; Larson, Greger ; Paudel, Yogesh ; Duijvesteijn, Naomi ; Harlizius, Barbara ; Hagemeijer, Yanick ; Crooijmans, Richard P. M. A. ; Groenen, Martien A. M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2014-07, Vol.5 (1), p.4392, Article 4392
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Whole Mitogenomes Reveal the History of Swamp Buffalo: Initially Shaped by Glacial Periods and Eventually Modelled by Domestication
Author / Creator:Wang, S. ; Chen, N. ; Capodiferro, M. R. ; Zhang, T. ; Lancioni, H. ; Zhang, H. ; Miao, Y. ; Chanthakhoun, V. ; Wanapat, M. ; Yindee, M. ; Zhang, Y. ; Lu, H. ; Caporali, L. ; Dang, R. ; Huang, Y. ; Lan, X. ; Plath, M. ; Chen, H. ; Lenstra, J. A. ; Achilli, A. ; Lei, C.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-07, Vol.7 (1), p.4708-8, Article 4708
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Multi-resolution localization of causal variants across the genome
Author / Creator:Sesia, Matteo ; Katsevich, Eugene ; Bates, Stephen ; Candès, Emmanuel ; Sabatti, Chiara
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-02, Vol.11 (1), p.1093-10, Article 1093
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Copy number variation of the restorer Rf4 underlies human selection of three-line hybrid rice breeding
Author / Creator:Zhao, Zhe ; Ding, Zhi ; Huang, Jingjing ; Meng, Hengjun ; Zhang, Zixu ; Gou, Xin ; Tang, Huiwu ; Xie, Xianrong ; Ping, Jingyao ; Xiao, Fangming ; Liu, Yao-Guang ; Xie, Yongyao ; Chen, Letian
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-11, Vol.14 (1), p.7333-14, Article 7333
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Rare variant phasing and haplotypic expression from RNA sequencing with phASER
Author / Creator:Castel, Stephane E. ; Mohammadi, Pejman ; Chung, Wendy K. ; Shen, Yufeng ; Lappalainen, Tuuli
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-09, Vol.7 (1), p.12817-6, Article 12817
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Multi-trait genome-wide association study of opioid addiction: OPRM1 and beyond
Author / Creator:Gaddis, Nathan ; Mathur, Ravi ; Marks, Jesse ; Zhou, Linran ; Quach, Bryan ; Waldrop, Alex ; Levran, Orna ; Agrawal, Arpana ; Randesi, Matthew ; Adelson, Miriam ; Jeffries, Paul W. ; Martin, Nicholas G. ; Degenhardt, Louisa ; Montgomery, Grant W. ; Wetherill, Leah ; Lai, Dongbing ; Bucholz, Kathleen ; Foroud, Tatiana ; Porjesz, Bernice ; Runarsdottir, Valgerdur ; Tyrfingsson, Thorarinn ; Einarsson, Gudmundur ; Gudbjartsson, Daniel F. ; Webb, Bradley Todd ; Crist, Richard C. ; Kranzler, Henry R. ; Sherva, Richard ; Zhou, Hang ; Hulse, Gary ; Wildenauer, Dieter ; Kelty, Erin ; Attia, John ; Holliday, Elizabeth G. ; McEvoy, Mark ; Scott, Rodney J. ; Schwab, Sibylle G. ; Maher, Brion S. ; Gruza, Richard ; Kreek, Mary Jeanne ; Nelson, Elliot C. ; Thorgeirsson, Thorgeir ; Stefansson, Kari ; Berrettini, Wade H. ; Gelernter, Joel ; Edenberg, Howard J. ; Bierut, Laura ; Hancock, Dana B. ; Johnson, Eric Otto
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-10, Vol.12 (1), p.16873-16, Article 16873
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A DNA barcode-based survey of wild urban bees in the Loire Valley, France
Author / Creator:Villalta, Irene ; Ledet, Romain ; Baude, Mathilde ; Genoud, David ; Bouget, Christophe ; Cornillon, Maxime ; Moreau, Sébastien ; Courtial, Béatrice ; Lopez-Vaamonde, Carlos
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-02, Vol.11 (1), p.4770-10, Article 4770
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A high-quality human reference panel reveals the complexity and distribution of genomic structural variants
Author / Creator:Hehir-Kwa, Jayne Y. ; Marschall, Tobias ; Kloosterman, Wigard P. ; Francioli, Laurent C. ; Baaijens, Jasmijn A. ; Dijkstra, Louis J. ; Abdellaoui, Abdel ; Koval, Vyacheslav ; Thung, Djie Tjwan ; Wardenaar, René ; Renkens, Ivo ; Coe, Bradley P. ; Deelen, Patrick ; de Ligt, Joep ; Lameijer, Eric-Wubbo ; van Dijk, Freerk ; Hormozdiari, Fereydoun ; Uitterlinden, André G. ; van Duijn, Cornelia M. ; Eichler, Evan E. ; de Bakker, Paul I. W. ; Swertz, Morris A. ; Wijmenga, Cisca ; van Ommen, Gert-Jan B. ; Slagboom, P. Eline ; Boomsma, Dorret I. ; Schönhuth, Alexander ; Ye, Kai ; Guryev, Victor
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-10, Vol.7 (1), p.12989-10, Article 12989
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Showing 21 to 40 of 304 results

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Imputation of ancient human genomes

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Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions

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A hybrid approach for de novo human genome sequence assembly and phasing

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Southeastern Asia fall armyworms are closely related to populations in Africa and India, consistent with common origin and recent migration

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Discovery of beneficial haplotypes for complex traits in maize landraces

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Genome maps across 26 human populations reveal population-specific patterns of structural variation

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A diploid assembly-based benchmark for variants in the major histocompatibility complex

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Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression

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Identity-by-descent detection across 487,409 British samples reveals fine scale population structure and ultra-rare variant associations

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Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing

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The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

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Haplotype-resolved genome sequencing: experimental methods and applications

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Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression

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Whole Mitogenomes Reveal the History of Swamp Buffalo: Initially Shaped by Glacial Periods and Eventually Modelled by Domestication

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Multi-resolution localization of causal variants across the genome

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Copy number variation of the restorer Rf4 underlies human selection of three-line hybrid rice breeding

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Rare variant phasing and haplotypic expression from RNA sequencing with phASER

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Multi-trait genome-wide association study of opioid addiction: OPRM1 and beyond

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A DNA barcode-based survey of wild urban bees in the Loire Valley, France

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A high-quality human reference panel reveals the complexity and distribution of genomic structural variants

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