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2,185 results for ATAC‐seq

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Select record 21
ArticlesPeer ReviewedFull Text
RNA‐seq and ATAC‐seq analysis of CD163+ macrophage‐induced progestin‐insensitive endometrial cancer cells
Author / Creator:Wang, Lulu ; Lv, Qiaoying ; Wu, Pengfei ; Luo, Shuhan ; Liu, Sijia ; Chen, Xiaojun ; Luo, Xuezhen
Publisher:United States: John Wiley & Sons, Inc
Journal title:Cancer medicine (Malden, MA), 2023-03, Vol.12 (5), p.5964-5978
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Integrated ATAC‐seq and RNA‐seq data analysis identifies transcription factors related to rice stripe virus infection in Oryza sativa
Author / Creator:Li, Miaomiao ; Li, Jing ; Zhang, Yan ; Zhai, Yushan ; Chen, Yi ; Lin, Lin ; Peng, Jiejun ; Zheng, Hongying ; Chen, Jianping ; Yan, Fei ; Lu, Yuwen
Publisher:Oxford: John Wiley & Sons, Inc
Journal title:Molecular plant pathology, 2024-03, Vol.25 (3), p.n/a
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SCALE method for single-cell ATAC-seq analysis via latent feature extraction
Author / Creator:Xiong, Lei ; Xu, Kui ; Tian, Kang ; Shao, Yanqiu ; Tang, Lei ; Gao, Ge ; Zhang, Michael ; Jiang, Tao ; Zhang, Qiangfeng Cliff
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-10, Vol.10 (1), p.4576-10, Article 4576
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scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning
Author / Creator:Lin, Yingxin ; Wu, Tung-Yu ; Wan, Sheng ; Yang, Jean Y. H. ; Wong, Wing H. ; Wang, Y. X. Rachel
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2022-05, Vol.40 (5), p.703-710
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ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
Author / Creator:Ou, Jianhong ; Liu, Haibo ; Yu, Jun ; Kelliher, Michelle A. ; Castilla, Lucio H. ; Lawson, Nathan D. ; Zhu, Lihua Julie
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-03, Vol.19 (1), p.169-13, Article 169
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Modeling fragment counts improves single-cell ATAC-seq analysis
Author / Creator:Martens, Laura D. ; Fischer, David S. ; Yépez, Vicente A. ; Theis, Fabian J. ; Gagneur, Julien
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2024-01, Vol.21 (1), p.28-31
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Single-cell ATAC-seq: strength in numbers
Author / Creator:Pott, Sebastian ; Lieb, Jason D.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2015-08, Vol.16 (1), p.172-172, Article 172
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scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks
Author / Creator:Yuan, Han ; Kelley, David R.
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2022-09, Vol.19 (9), p.1088-1096
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ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration
Author / Creator:Wang, Jie ; Zibetti, Cristina ; Shang, Peng ; Sripathi, Srinivasa R. ; Zhang, Pingwu ; Cano, Marisol ; Hoang, Thanh ; Xia, Shuli ; Ji, Hongkai ; Merbs, Shannath L. ; Zack, Donald J. ; Handa, James T. ; Sinha, Debasish ; Blackshaw, Seth ; Qian, Jiang
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-04, Vol.9 (1), p.1364-13, Article 1364
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Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement
Author / Creator:Jia, Guangshuai ; Preussner, Jens ; Chen, Xi ; Guenther, Stefan ; Yuan, Xuejun ; Yekelchyk, Michail ; Kuenne, Carsten ; Looso, Mario ; Zhou, Yonggang ; Teichmann, Sarah ; Braun, Thomas
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-11, Vol.9 (1), p.4877-17, Article 4877
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Single-cell ATAC-seq signal extraction and enhancement with SCATE
Author / Creator:Ji, Zhicheng ; Zhou, Weiqiang ; Hou, Wenpin ; Ji, Hongkai
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2020-07, Vol.21 (1), p.161-161, Article 161
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Comparison of differential accessibility analysis strategies for ATAC-seq data
Author / Creator:Gontarz, Paul ; Fu, Shuhua ; Xing, Xiaoyun ; Liu, Shaopeng ; Miao, Benpeng ; Bazylianska, Viktoriia ; Sharma, Akhil ; Madden, Pamela ; Cates, Kitra ; Yoo, Andrew ; Moszczynska, Anna ; Wang, Ting ; Zhang, Bo
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-06, Vol.10 (1), p.10150-10150, Article 10150
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Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen
Author / Creator:Li, Zhijian ; Kuppe, Christoph ; Ziegler, Susanne ; Cheng, Mingbo ; Kabgani, Nazanin ; Menzel, Sylvia ; Zenke, Martin ; Kramann, Rafael ; Costa, Ivan G.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-11, Vol.12 (1), p.6386-6386, Article 6386
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Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads
Author / Creator:De Rop, Florian V ; Ismail, Joy N ; Bravo González-Blas, Carmen ; Hulselmans, Gert J ; Flerin, Christopher Campbell ; Janssens, Jasper ; Theunis, Koen ; Christiaens, Valerie M ; Wouters, Jasper ; Marcassa, Gabriele ; de Wit, Joris ; Poovathingal, Suresh ; Aerts, Stein
Publisher:England: eLife Sciences Publications, Ltd
Journal title:eLife, 2022-02, Vol.11
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Decoding cell replicational age from single-cell ATAC-seq data
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2024-05, Vol.43 (5), p.700-701
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A plate-based single-cell ATAC-seq workflow for fast and robust profiling of chromatin accessibility
Author / Creator:Xu, Wei ; Wen, Yi ; Liang, Yingying ; Xu, Qiushi ; Wang, Xuefei ; Jin, Wenfei ; Chen, Xi
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2021-08, Vol.16 (8), p.4084-4107
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Bibliometric review of ATAC-Seq and its application in gene expression
Author / Creator:Luo, Liheng ; Gribskov, Michael ; Wang, Sufang
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2022-05, Vol.23 (3)
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An ATAC-seq atlas of chromatin accessibility in mouse tissues
Author / Creator:Liu, Chuanyu ; Wang, Mingyue ; Wei, Xiaoyu ; Wu, Liang ; Xu, Jiangshan ; Dai, Xi ; Xia, Jun ; Cheng, Mengnan ; Yuan, Yue ; Zhang, Pengfan ; Li, Jiguang ; Feng, Taiqing ; Chen, Ao ; Zhang, Wenwei ; Chen, Fang ; Shang, Zhouchun ; Zhang, Xiuqing ; Peters, Brock A. ; Liu, Longqi
Publisher:London: Nature Publishing Group UK
Journal title:Scientific data, 2019-05, Vol.6 (1), p.65-65, Article 65
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Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling
Author / Creator:Karabacak Calviello, Aslıhan ; Hirsekorn, Antje ; Wurmus, Ricardo ; Yusuf, Dilmurat ; Ohler, Uwe
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-02, Vol.20 (1), p.42-42, Article 42
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ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells
Author / Creator:Scharer, Christopher D. ; Blalock, Emily L. ; Barwick, Benjamin G. ; Haines, Robert R. ; Wei, Chungwen ; Sanz, Ignacio ; Boss, Jeremy M.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2016-06, Vol.6 (1), p.27030-27030, Article 27030
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Showing 21 to 40 of 2,185 results

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RNA‐seq and ATAC‐seq analysis of CD163+ macrophage‐induced progestin‐insensitive endometrial cancer cells

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Integrated ATAC‐seq and RNA‐seq data analysis identifies transcription factors related to rice stripe virus infection in Oryza sativa

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SCALE method for single-cell ATAC-seq analysis via latent feature extraction

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scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning

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ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data

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Modeling fragment counts improves single-cell ATAC-seq analysis

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Single-cell ATAC-seq: strength in numbers

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scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

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ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration

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Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement

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Single-cell ATAC-seq signal extraction and enhancement with SCATE

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Comparison of differential accessibility analysis strategies for ATAC-seq data

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Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen

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Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads

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Decoding cell replicational age from single-cell ATAC-seq data

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A plate-based single-cell ATAC-seq workflow for fast and robust profiling of chromatin accessibility

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Bibliometric review of ATAC-Seq and its application in gene expression

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An ATAC-seq atlas of chromatin accessibility in mouse tissues

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Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

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ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells

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