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49 results for Cieślik,+Marcin

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ArticlesPeer ReviewedFull Text
Cancer transcriptome profiling at the juncture of clinical translation
Author / Creator:Cieślik, Marcin ; Chinnaiyan, Arul M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2018-02, Vol.19 (2), p.93-109
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ArticlesPeer ReviewedFull Text
Competing for enhancers: PVT1 fine-tunes MYC expression
Author / Creator:Parolia, Abhijit ; Cieślik, Marcin ; Chinnaiyan, Arul M.
Publisher:London: Nature Publishing Group UK
Journal title:Cell research, 2018-08, Vol.28 (8), p.785-786
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ArticlesPeer ReviewedFull Text
Combinatorial epigenetic patterns as quantitative predictors of chromatin biology
Author / Creator:Cieślik, Marcin ; Bekiranov, Stefan
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2014-01, Vol.15 (1), p.76-76
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A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Author / Creator:Cieślik, Marcin ; Mura, Cameron
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-02, Vol.12 (1), p.61-61, Article 61
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ArticlesPeer ReviewedFull Text
Genome-wide predictors of NF-κB recruitment and transcriptional activity
Author / Creator:Cieślik, Marcin ; Bekiranov, Stefan
Publisher:England: BioMed Central
Journal title:BioData mining, 2015-11, Vol.8 (1), p.37-37, Article 37
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Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition
Author / Creator:Cieślik, Marcin ; Hoang, Stephen A ; Baranova, Natalya ; Chodaparambil, Sanjay ; Kumar, Manish ; Allison, David F ; Xu, Xiaojiang ; Wamsley, J Jacob ; Gray, Lisa ; Jones, David R ; Mayo, Marty W ; Bekiranov, Stefan
Publisher:England: BioMed Central Ltd
Journal title:Epigenetics & chromatin, 2013-09, Vol.6 (1), p.28-28, Article 28
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ArticlesPeer ReviewedFull Text
PFA ependymoma-associated protein EZHIP inhibits PRC2 activity through a H3 K27M-like mechanism
Author / Creator:Jain, Siddhant U. ; Do, Truman J. ; Lund, Peder J. ; Rashoff, Andrew Q. ; Diehl, Katharine L. ; Cieslik, Marcin ; Bajic, Andrea ; Juretic, Nikoleta ; Deshmukh, Shriya ; Venneti, Sriram ; Muir, Tom W. ; Garcia, Benjamin A. ; Jabado, Nada ; Lewis, Peter W.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-05, Vol.10 (1), p.2146-14, Article 2146
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ArticlesPeer ReviewedFull Text
Targeting the MLL complex in castration-resistant prostate cancer
Author / Creator:Malik, Rohit ; Khan, Amjad P ; Asangani, Irfan A ; Cieślik, Marcin ; Prensner, John R ; Wang, Xiaoju ; Iyer, Matthew K ; Jiang, Xia ; Borkin, Dmitry ; Escara-Wilke, June ; Stender, Rachell ; Wu, Yi-Mi ; Niknafs, Yashar S ; Jing, Xiaojun ; Qiao, Yuanyuan ; Palanisamy, Nallasivam ; Kunju, Lakshmi P ; Krishnamurthy, Pranathi M ; Yocum, Anastasia K ; Mellacheruvu, Dattatreya ; Nesvizhskii, Alexey I ; Cao, Xuhong ; Dhanasekaran, Saravana M ; Feng, Felix Y ; Grembecka, Jolanta ; Cierpicki, Tomasz ; Chinnaiyan, Arul M
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2015-04, Vol.21 (4), p.344-352
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ArticlesPeer ReviewedFull Text
Analysis of the androgen receptor–regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression
Author / Creator:Zhang, Yajia ; Pitchiaya, Sethuramasundaram ; Cieślik, Marcin ; Niknafs, Yashar S. ; Tien, Jean C.-Y. ; Hosono, Yasuyuki ; Iyer, Matthew K. ; Yazdani, Sahr ; Subramaniam, Shruthi ; Shukla, Sudhanshu K. ; Jiang, Xia ; Wang, Lisha ; Liu, Tzu-Ying ; Uhl, Michael ; Gawronski, Alexander R. ; Qiao, Yuanyuan ; Xiao, Lanbo ; Dhanasekaran, Saravana M. ; Juckette, Kristin M. ; Kunju, Lakshmi P. ; Cao, Xuhong ; Patel, Utsav ; Batish, Mona ; Shukla, Girish C. ; Paulsen, Michelle T. ; Ljungman, Mats ; Jiang, Hui ; Mehra, Rohit ; Backofen, Rolf ; Sahinalp, Cenk S. ; Freier, Susan M. ; Watt, Andrew T. ; Guo, Shuling ; Wei, John T. ; Feng, Felix Y. ; Malik, Rohit ; Chinnaiyan, Arul M.
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2018-06, Vol.50 (6), p.814-824
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ArticlesPeer ReviewedFull Text
LIMIT is an immunogenic lncRNA in cancer immunity and immunotherapy
Author / Creator:Li, Gaopeng ; Kryczek, Ilona ; Nam, Jutaek ; Li, Xiong ; Li, Shasha ; Li, Jing ; Wei, Shuang ; Grove, Sara ; Vatan, Linda ; Zhou, Jiajia ; Du, Wan ; Lin, Heng ; Wang, Ton ; Subramanian, Chitra ; Moon, James J. ; Cieslik, Marcin ; Cohen, Mark ; Zou, Weiping
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2021-05, Vol.23 (5), p.526-537
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ArticlesPeer ReviewedFull Text
A novel ATXN1-DUX4 fusion expands the spectrum of ‘CIC-rearranged sarcoma’ of the CNS to include non-CIC alterations
Author / Creator:Pratt, Drew ; Kumar-Sinha, Chandan ; Cieślik, Marcin ; Mehra, Rohit ; Xiao, Hong ; Shao, Lina ; Franson, Andrea ; Cantor, Evan ; Chinnaiyan, Arul M. ; Mody, Rajen ; Abdullaev, Zied ; Aldape, Kenneth ; Quezado, Martha ; Camelo-Piragua, Sandra
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Acta neuropathologica, 2021-04, Vol.141 (4), p.619-622
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ArticlesPeer ReviewedFull Text
Liver metastasis restrains immunotherapy efficacy via macrophage-mediated T cell elimination
Author / Creator:Yu, Jiali ; Green, Michael D. ; Li, Shasha ; Sun, Yilun ; Journey, Sara N. ; Choi, Jae Eun ; Rizvi, Syed Monem ; Qin, Angel ; Waninger, Jessica J. ; Lang, Xueting ; Chopra, Zoey ; El Naqa, Issam ; Zhou, Jiajia ; Bian, Yingjie ; Jiang, Long ; Tezel, Alangoya ; Skvarce, Jeremy ; Achar, Rohan K. ; Sitto, Merna ; Rosen, Benjamin S. ; Su, Fengyun ; Narayanan, Sathiya P. ; Cao, Xuhong ; Wei, Shuang ; Szeliga, Wojciech ; Vatan, Linda ; Mayo, Charles ; Morgan, Meredith A. ; Schonewolf, Caitlin A. ; Cuneo, Kyle ; Kryczek, Ilona ; Ma, Vincent T. ; Lao, Christopher D. ; Lawrence, Theodore S. ; Ramnath, Nithya ; Wen, Fei ; Chinnaiyan, Arul M. ; Cieslik, Marcin ; Alva, Ajjai ; Zou, Weiping
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2021-01, Vol.27 (1), p.152-164
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ArticlesPeer ReviewedFull Text
Epigenetic driver mutations in ARID1A shape cancer immune phenotype and immunotherapy
Author / Creator:Li, Jing ; Wang, Weichao ; Zhang, Yajia ; Cieślik, Marcin ; Guo, Jipeng ; Tan, Mengyao ; Green, Michael D. ; Wang, Weimin ; Lin, Heng ; Li, Wei ; Wei, Shuang ; Zhou, Jiajia ; Li, Gaopeng ; Jing, Xiaojun ; Vatan, Linda ; Zhao, Lili ; Bitler, Benjamin ; Zhang, Rugang ; Cho, Kathleen R. ; Dou, Yali ; Kryczek, Ilona ; Chan, Timothy A. ; Huntsman, David ; Chinnaiyan, Arul M. ; Zou, Weiping
Publisher:United States: American Society for Clinical Investigation
Journal title:The Journal of clinical investigation, 2020-05, Vol.130 (5), p.2712-2726
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Integrative clinical genomics of metastatic cancer
Author / Creator:Robinson, Dan R. ; Wu, Yi-Mi ; Lonigro, Robert J. ; Vats, Pankaj ; Cobain, Erin ; Everett, Jessica ; Cao, Xuhong ; Rabban, Erica ; Kumar-Sinha, Chandan ; Raymond, Victoria ; Schuetze, Scott ; Alva, Ajjai ; Siddiqui, Javed ; Chugh, Rashmi ; Worden, Francis ; Zalupski, Mark M. ; Innis, Jeffrey ; Mody, Rajen J. ; Tomlins, Scott A. ; Lucas, David ; Baker, Laurence H. ; Ramnath, Nithya ; Schott, Ann F. ; Hayes, Daniel F. ; Vijai, Joseph ; Offit, Kenneth ; Stoffel, Elena M. ; Roberts, J. Scott ; Smith, David C. ; Kunju, Lakshmi P. ; Talpaz, Moshe ; Cieślik, Marcin ; Chinnaiyan, Arul M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2017-08, Vol.548 (7667), p.297-303
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Distinct structural classes of activating FOXA1 alterations in advanced prostate cancer
Author / Creator:Parolia, Abhijit ; Cieslik, Marcin ; Chu, Shih-Chun ; Xiao, Lanbo ; Ouchi, Takahiro ; Zhang, Yuping ; Wang, Xiaoju ; Vats, Pankaj ; Cao, Xuhong ; Pitchiaya, Sethuramasundaram ; Su, Fengyun ; Wang, Rui ; Feng, Felix Y. ; Wu, Yi-Mi ; Lonigro, Robert J. ; Robinson, Dan R. ; Chinnaiyan, Arul M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2019-07, Vol.571 (7765), p.413-418
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Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer
Author / Creator:Asangani, Irfan A. ; Dommeti, Vijaya L. ; Wang, Xiaoju ; Malik, Rohit ; Cieslik, Marcin ; Yang, Rendong ; Escara-Wilke, June ; Wilder-Romans, Kari ; Dhanireddy, Sudheer ; Engelke, Carl ; Iyer, Mathew K. ; Jing, Xiaojun ; Wu, Yi-Mi ; Cao, Xuhong ; Qin, Zhaohui S. ; Wang, Shaomeng ; Feng, Felix Y. ; Chinnaiyan, Arul M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2014-06, Vol.510 (7504), p.278-282
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Unraveling the glycosylated immunopeptidome with HLA-Glyco
Author / Creator:Bedran, Georges ; Polasky, Daniel A. ; Hsiao, Yi ; Yu, Fengchao ; da Veiga Leprevost, Felipe ; Alfaro, Javier A. ; Cieslik, Marcin ; Nesvizhskii, Alexey I.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-06, Vol.14 (1), p.3461-3461, Article 3461
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ArticlesPeer ReviewedFull Text
Integrated cancer cell-specific single-cell RNA-seq datasets of immune checkpoint blockade-treated patients
Author / Creator:Gondal, Mahnoor N. ; Cieslik, Marcin ; Chinnaiyan, Arul M.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific data, 2025-01, Vol.12 (1), p.139-12, Article 139
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ArticlesPeer ReviewedFull Text
Epigenetic reprogramming in the epithelial-to-mesenchymal transition
Author / Creator:Hoang, Stephen ; Cieślik, Marcin ; Chodaparambil, Sanjay ; Baranova, Natalya ; Kumar, Manish ; Allison, David ; Wamsley, Jake ; Gray, Lisa ; Mayo, Marty ; Bekiranov, Stefan
Publisher:London: BioMed Central
Journal title:BMC proceedings, 2012-10, Vol.6 (S6), p.O28-O28, Article O28
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PROX1 is an early driver of lineage plasticity in prostate cancer
Author / Creator:Duan, Zhi ; Shi, Mingchen ; Kumaraswamy, Anbarasu ; Lin, Dong ; Khokhani, Dhruv ; Wang, Yong ; Zhang, Chao ; Flores, Diana ; Rodansky, Eva ; Swaim, Olivia A ; Storck, William K ; Beck, Hannah N ; Patel, Radhika A ; Sayar, Erolcan ; Hanratty, Brian P ; Xue, Hui ; Dong, Xin ; Maylin, Zoe R ; Wan, Rensheng ; Quigley, David A ; Sjöström, Martin ; Hu, Ya-Mei ; Zhao, Faming ; Xia, Zheng ; Cheng, Siyuan ; Yu, Xiuping ; Feng, Felix Y ; Zhang, Li ; Aggarwal, Rahul ; Small, Eric J ; Ravikumar, Visweswaran ; Rao, Arvind ; Bedi, Karan ; Lee, John K ; Morrissey, Colm ; Coleman, Ilsa ; Nelson, Peter S ; Corey, Eva ; Udager, Aaron M ; Rebernick, Ryan J ; Cieslik, Marcin P ; Chinnaiyan, Arul M ; Yates, Joel A ; Haffner, Michael C ; Wang, Yuzhuo ; Alumkal, Joshi J
Publisher:United States: American Society for Clinical Investigation
Journal title:The Journal of clinical investigation, 2025-06, Vol.135 (11)
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Showing 1 to 20 of 49 results

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Cancer transcriptome profiling at the juncture of clinical translation

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Competing for enhancers: PVT1 fine-tunes MYC expression

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Combinatorial epigenetic patterns as quantitative predictors of chromatin biology

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A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines

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Genome-wide predictors of NF-κB recruitment and transcriptional activity

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Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition

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PFA ependymoma-associated protein EZHIP inhibits PRC2 activity through a H3 K27M-like mechanism

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Targeting the MLL complex in castration-resistant prostate cancer

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Analysis of the androgen receptor–regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression

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LIMIT is an immunogenic lncRNA in cancer immunity and immunotherapy

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A novel ATXN1-DUX4 fusion expands the spectrum of ‘CIC-rearranged sarcoma’ of the CNS to include non-CIC alterations

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Liver metastasis restrains immunotherapy efficacy via macrophage-mediated T cell elimination

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Epigenetic driver mutations in ARID1A shape cancer immune phenotype and immunotherapy

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Integrative clinical genomics of metastatic cancer

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Distinct structural classes of activating FOXA1 alterations in advanced prostate cancer

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Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer

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Unraveling the glycosylated immunopeptidome with HLA-Glyco

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Integrated cancer cell-specific single-cell RNA-seq datasets of immune checkpoint blockade-treated patients

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Epigenetic reprogramming in the epithelial-to-mesenchymal transition

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PROX1 is an early driver of lineage plasticity in prostate cancer

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