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ArticlesPeer ReviewedFull Text
signaling phospholipid PIP₃ creates a new interaction surface on the nuclear receptor SF-1
Author / Creator:Blind, Raymond D. ; Sablin, Elena P. ; Kuchenbecker, Kristopher M. ; Chiu, Hsiu-Ju ; Deacon, Ashley M. ; Das, Debanu ; Fletterick, Robert J. ; Ingraham, Holly A.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-10, Vol.111 (42), p.15054-15059
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ArticlesPeer ReviewedFull Text
Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells
Author / Creator:Hayashi, Yohei ; Caboni, Laura ; Das, Debanu ; Yumoto, Fumiaki ; Clayton, Thomas ; Deller, Marc C. ; Nguyen, Phuong ; Farr, Carol L. ; Chiu, Hsiu-Ju ; Miller, Mitchell D. ; Elsliger, Marc-André ; Deacon, Ashley M. ; Godzik, Adam ; Lesley, Scott A. ; Tomoda, Kiichiro ; Conklin, Bruce R. ; Wilson, Ian A. ; Yamanaka, Shinya ; Fletterick, Robert J.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-04, Vol.112 (15), p.4666-4671
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ArticlesPeer ReviewedFull Text
Speeding up drug discovery with high-quality and high-reliability crystallography-based library screening
Author / Creator:Das, Debanu
Journal title:Structural dynamics (Melville, N.Y.), 2025-03, Vol.12 (2), p.A1-A1
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ArticlesPeer ReviewedFull Text
Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein
Author / Creator:Das, Debanu ; Hervé, Mireille ; Feuerhelm, Julie ; Farr, Carol L. ; Chiu, Hsiu-Ju ; Elsliger, Marc-André ; Knuth, Mark W. ; Klock, Heath E. ; Miller, Mitchell D. ; Godzik, Adam ; Lesley, Scott A. ; Deacon, Ashley M. ; Mengin-Lecreulx, Dominique ; Wilson, Ian A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-03, Vol.6 (3), p.e17624
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ArticlesPeer ReviewedFull Text
Improved molecular replacement by density- and energy-guided protein structure optimization
Author / Creator:DiMaio, Frank ; Terwilliger, Thomas C. ; Read, Randy J. ; Wlodawer, Alexander ; Oberdorfer, Gustav ; Wagner, Ulrike ; Valkov, Eugene ; Alon, Assaf ; Fass, Deborah ; Axelrod, Herbert L. ; Das, Debanu ; Vorobiev, Sergey M. ; Iwaï, Hideo ; Pokkuluri, P. Raj ; Baker, David
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2011-05, Vol.473 (7348), p.540-543
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ArticlesPeer ReviewedFull Text
A New Drug Discovery Platform: Application to DNA Polymerase Eta and Apurinic/Apyrimidinic Endonuclease 1
Author / Creator:Das, Debanu ; Duncton, Matthew A. J. ; Georgiadis, Taxiarchis M. ; Pellicena, Patricia ; Clark, Jennifer ; Sobol, Robert W. ; Georgiadis, Millie M. ; King-Underwood, John ; Jobes, David V. ; Chang, Caleb ; Gao, Yang ; Deacon, Ashley M. ; Wilson, David M.
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2023-11, Vol.24 (23), p.16637
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ArticlesPeer ReviewedFull Text
The signaling phospholipid PIP^sub 3^ creates a new interaction surface on the nuclear receptor SF-1
Author / Creator:Blind, Raymond D ; Sablin, Elena P ; Kuchenbecker, Kristopher M ; Chiu, Hsiu-Ju ; Deacon, Ashley M ; Das, Debanu ; Fletterick, Robert J ; Ingraham, Holly A
Publisher:Washington: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-10, Vol.111 (42), p.15054
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ArticlesPeer ReviewedFull Text
The signaling phospholipid PIP 3 creates a new interaction surface on the nuclear receptor SF-1
Author / Creator:Blind, Raymond D. ; Sablin, Elena P. ; Kuchenbecker, Kristopher M. ; Chiu, Hsiu-Ju ; Deacon, Ashley M. ; Das, Debanu ; Fletterick, Robert J. ; Ingraham, Holly A.
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-10, Vol.111 (42), p.15054-15059
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ArticlesPeer ReviewedFull Text
Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthes...
Author / Creator:Das, Debanu ; Murzin, Alexey G ; Rawlings, Neil D ; Finn, Robert D ; Coggill, Penelope ; Bateman, Alex ; Godzik, Adam ; Aravind, L
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2014-03, Vol.15 (1), p.75-75, Article 75
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ArticlesPeer ReviewedFull Text
Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila
Author / Creator:Coggill, Penelope ; Eberhardt, Ruth Y ; Finn, Robert D ; Chang, Yuanyuan ; Jaroszewski, Lukasz ; Godzik, Adam ; Das, Debanu ; Xu, Qingping ; Axelrod, Herbert L ; Aravind, L ; Murzin, Alexey G ; Bateman, Alex
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2013-09, Vol.14 (1), p.265-265, Article 265
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ArticlesPeer ReviewedFull Text
Increasing the Radius of Convergence of Molecular Replacement by Density and Energy Guided Protein Structure Optimization
Author / Creator:DiMaio, Frank ; Terwilliger, Thomas C. ; Read, Randy J. ; Wlodawer, Alexander ; Oberdorfer, Gustav ; Wagner, Ulrike ; Valkov, Eugene ; Alon, Assaf ; Fass, Deborah ; Axelrod, Herbert L. ; Das, Debanu ; Vorobiev, Sergey M. ; Iwai, Hideo ; Pokkuluri, P. Raj ; Baker, David
Journal title:Nature (London), 2011-05, Vol.473 (7348), p.540-543
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ArticlesPeer ReviewedFull Text
Structure and Function of the First Full-Length Murein Peptide Ligase
Author / Creator:Das, Debanu ; Hervé, Mireille ; Feuerhelm, Julie ; Farr, Carol L ; Chiu, Hsiu-Ju ; Elsliger, Marc-André ; Knuth, Mark W ; Klock, Heath E ; Miller, Mitchell D ; Godzik, Adam ; Lesley, Scott A ; Deacon, Ashley M ; Mengin-Lecreulx, Dominique ; Wilson, Ian A
Publisher:Public Library of Science
Journal title:PloS one, 2011-03, Vol.6 (3), p.e17624
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ArticlesPeer ReviewedFull Text
Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center
Author / Creator:Shin, Dong Hae ; Hou, Jingtong ; Chandonia, John-Marc ; Das, Debanu ; Choi, In-Geol ; Kim, Rosalind ; Kim, Sung-Hou
Publisher:Netherlands: Springer Nature B.V
Journal title:Journal of structural and functional genomics, 2007-09, Vol.8 (2-3), p.99-105
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ArticlesPeer ReviewedFull Text
Structural Genomics of Minimal Organisms and Protein Fold Space
Author / Creator:Kim, Sung-Hou ; Shin, Dong Hae ; Liu, Jinyu ; Oganesyan, Vaheh ; Chen, Shengfeng ; Xu, Qian Steven ; Kim, Jeong-Sun ; Das, Debanu ; Schulze-Gahmen, Ursula ; Holbrook, Stephen R. ; Holbrook, Elizabeth L. ; Martinez, Bruno A. ; Oganesyan, Natalia ; DeGiovanni, Andy ; Lou, Yun ; Henriquez, Marlene ; Huang, Candice ; Jancarik, Jaru ; Pufan, Ramona ; Choi, In-Geol ; Chandonia, John-Marc ; Hou, Jingtong ; Gold, Barbara ; Yokota, Hisao ; Brenner, Steven E. ; Adams, Paul D. ; Kim, Rosalind
Publisher:Netherlands: Springer Nature B.V
Journal title:Journal of structural and functional genomics, 2005-09, Vol.6 (2-3), p.63-70
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signaling phospholipid PIP₃ creates a new interaction surface on the nuclear receptor SF-1

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Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells

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Speeding up drug discovery with high-quality and high-reliability crystallography-based library screening

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Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein

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Improved molecular replacement by density- and energy-guided protein structure optimization

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A New Drug Discovery Platform: Application to DNA Polymerase Eta and Apurinic/Apyrimidinic Endonuclease 1

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The signaling phospholipid PIP^sub 3^ creates a new interaction surface on the nuclear receptor SF-1

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The signaling phospholipid PIP 3 creates a new interaction surface on the nuclear receptor SF-1

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Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthes...

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Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila

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Increasing the Radius of Convergence of Molecular Replacement by Density and Energy Guided Protein Structure Optimization

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Structure and Function of the First Full-Length Murein Peptide Ligase

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Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center

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Structural Genomics of Minimal Organisms and Protein Fold Space

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