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ArticlesPeer ReviewedFull Text
Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome
Author / Creator:Zapata, Luis ; Pich, Oriol ; Serrano, Luis ; Kondrashov, Fyodor A ; Ossowski, Stephan ; Schaefer, Martin H
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-05, Vol.19 (1), p.67-67, Article 67
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ArticlesPeer ReviewedFull Text
Highly specific gene silencing by artificial miRNAs in rice
Author / Creator:Warthmann, Norman ; Chen, Hao ; Ossowski, Stephan ; Weigel, Detlef ; Hervé, Philippe
Publisher:United States: Public Library of Science
Journal title:PloS one, 2008-03, Vol.3 (3), p.e1829-e1829
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ArticlesPeer ReviewedFull Text
The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues
Author / Creator:Muyas, Francesc ; Zapata, Luis ; Guigó, Roderic ; Ossowski, Stephan
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2020-05, Vol.12 (1), p.49-14, Article 49
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ArticlesPeer ReviewedFull Text
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
Author / Creator:Koenig, Daniel ; Jiménez-Gómez, José M ; Kimura, Seisuke ; Fulop, Daniel ; Chitwood, Daniel H ; Headland, Lauren R ; Kumar, Ravi ; Covington, Michael F ; Devisetty, Upendra Kumar ; Tat, An V ; Tohge, Takayuki ; Bolger, Anthony ; Schneeberger, Korbinian ; Ossowski, Stephan ; Lanz, Christa ; Xiong, Guangyan ; Taylor-Teeples, Mallorie ; Brady, Siobhan M ; Pauly, Markus ; Weigel, Detlef ; Usadel, Björn ; Fernie, Alisdair R ; Peng, Jie ; Sinha, Neelima R ; Maloof, Julin N
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-07, Vol.110 (28), p.E2655-E2662
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ArticlesPeer ReviewedFull Text
Simultaneous alignment of short reads against multiple genomes
Author / Creator:Schneeberger, Korbinian ; Hagmann, Jörg ; Ossowski, Stephan ; Warthmann, Norman ; Gesing, Sandra ; Kohlbacher, Oliver ; Weigel, Detlef
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2009-09, Vol.10 (9), p.R98-2248, Article R98
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ArticlesPeer ReviewedFull Text
Reference-guided assembly of four diverse Arabidopsis thaliana genomes
Author / Creator:Schneeberger, Korbinian ; Ossowski, Stephan ; Ott, Felix ; Klein, Juliane D ; Wang, Xi ; Lanz, Christa ; Smith, Lisa M ; Cao, Jun ; Fitz, Joffrey ; Warthmann, Norman ; Henz, Stefan R ; Huson, Daniel H ; Weigel, Detlef
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-06, Vol.108 (25), p.10249-10254
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ArticlesPeer ReviewedFull Text
Recombination and linkage disequilibrium in Arabidopsis thaliana
Author / Creator:Kim, Sung ; Plagnol, Vincent ; Hu, Tina T ; Toomajian, Christopher ; Clark, Richard M ; Ossowski, Stephan ; Ecker, Joseph R ; Weigel, Detlef ; Nordborg, Magnus
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2007-09, Vol.39 (9), p.1151-1155
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ArticlesPeer ReviewedFull Text
Tumour-informed liquid biopsies to monitor advanced melanoma patients under immune checkpoint inhibition
Author / Creator:Schroeder, Christopher ; Gatidis, Sergios ; Kelemen, Olga ; Schütz, Leon ; Bonzheim, Irina ; Muyas, Francesc ; Martus, Peter ; Admard, Jakob ; Armeanu-Ebinger, Sorin ; Gückel, Brigitte ; Küstner, Thomas ; Garbe, Claus ; Flatz, Lukas ; Pfannenberg, Christina ; Ossowski, Stephan ; Forschner, Andrea
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-10, Vol.15 (1), p.8750-9, Article 8750
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ArticlesPeer ReviewedFull Text
Rare functional genetic variants in COL7A1, COL6A5, COL1A2 and COL5A2 frequently occur in Chiari Malformation Type 1
Author / Creator:Urbizu, Aintzane ; Garrett, Melanie E ; Soldano, Karen ; Drechsel, Oliver ; Loth, Dorothy ; Marcé-Grau, Anna ; Mestres I Soler, Olga ; Poca, Maria A ; Ossowski, Stephan ; Macaya, Alfons ; Loth, Francis ; Labuda, Rick ; Ashley-Koch, Allison
Publisher:United States: Public Library of Science
Journal title:PloS one, 2021-05, Vol.16 (5), p.e0251289-e0251289
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ArticlesPeer ReviewedFull Text
Specific Gene Silencing by Artificial MicroRNAs in Physcomitrella patens: An Alternative to Targeted Gene Knockouts
Author / Creator:Khraiwesh, Basel ; Ossowski, Stephan ; Weigel, Detlef ; Reski, Ralf ; Frank, Wolfgang
Publisher:Rockville, MD: American Society of Plant Biologists
Journal title:Plant physiology (Bethesda), 2008-10, Vol.148 (2), p.684-693
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ArticlesPeer ReviewedFull Text
Targeted next-generation sequencing in steroid-resistant nephrotic syndrome: mutations in multiple glomerular genes may influence disease severity
Author / Creator:Bullich, Gemma ; Trujillano, Daniel ; Santín, Sheila ; Ossowski, Stephan ; Mendizábal, Santiago ; Fraga, Gloria ; Madrid, Álvaro ; Ariceta, Gema ; Ballarín, José ; Torra, Roser ; Estivill, Xavier ; Ars, Elisabet
Publisher:England: Nature Publishing Group
Journal title:European journal of human genetics : EJHG, 2015-09, Vol.23 (9), p.1192-1199
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ArticlesPeer ReviewedFull Text
Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa
Author / Creator:Peter, Silke ; Oberhettinger, Philipp ; Schuele, Leonard ; Dinkelacker, Ariane ; Vogel, Wichard ; Dörfel, Daniela ; Bezdan, Daniela ; Ossowski, Stephan ; Marschal, Matthias ; Liese, Jan ; Willmann, Matthias
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2017-11, Vol.18 (1), p.859-859, Article 859
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ArticlesPeer ReviewedFull Text
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells
Author / Creator:Tarbier, Marcel ; Mackowiak, Sebastian D. ; Frade, João ; Catuara-Solarz, Silvina ; Biryukova, Inna ; Gelali, Eleni ; Menéndez, Diego Bárcena ; Zapata, Luis ; Ossowski, Stephan ; Bienko, Magda ; Gallant, Caroline J. ; Friedländer, Marc R.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-10, Vol.11 (1), p.5445-5445, Article 5445
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ArticlesPeer ReviewedFull Text
Dynamics of cell-free tumor DNA correlate with early MRI response during chemoradiotherapy in rectal cancer
Author / Creator:Clasen, Kerstin ; Gani, Cihan ; Schuetz, Leon ; Clasen, Stephan ; Ballin, Nadja ; Bonzheim, Irina ; Orth, Michael ; Ossowski, Stephan ; Riess, Olaf ; Niyazi, Maximilian ; Schroeder, Christopher ; Kelemen, Olga
Publisher:England: BioMed Central Ltd
Journal title:Radiation oncology (London, England), 2024-11, Vol.19 (1), p.153-9, Article 153
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Efficient and flexible Integration of variant characteristics in rare variant association studies using integrated nested Laplace approximation
Author / Creator:Susak, Hana ; Serra-Saurina, Laura ; Demidov, German ; Rabionet, Raquel ; Domènech, Laura ; Bosio, Mattia ; Muyas, Francesc ; Estivill, Xavier ; Escaramís, Geòrgia ; Ossowski, Stephan
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2021-02, Vol.17 (2), p.e1007784
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Tracking of Antibiotic Resistance Transfer and Rapid Plasmid Evolution in a Hospital Setting by Nanopore Sequencing
Author / Creator:Peter, Silke ; Bosio, Mattia ; Gross, Caspar ; Bezdan, Daniela ; Gutierrez, Javier ; Oberhettinger, Philipp ; Liese, Jan ; Vogel, Wichard ; Dörfel, Daniela ; Berger, Lennard ; Marschal, Matthias ; Willmann, Matthias ; Gut, Ivo ; Gut, Marta ; Autenrieth, Ingo ; Ossowski, Stephan
Publisher:1752 N St., N.W., Washington, DC: American Society for Microbiology
Journal title:mSphere, 2020-08, Vol.5 (4)
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The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana
Author / Creator:Wijnker, Erik ; Velikkakam James, Geo ; Ding, Jia ; Becker, Frank ; Klasen, Jonas R ; Rawat, Vimal ; Rowan, Beth A ; de Jong, Daniël F ; de Snoo, C Bastiaan ; Zapata, Luis ; Huettel, Bruno ; de Jong, Hans ; Ossowski, Stephan ; Weigel, Detlef ; Koornneef, Maarten ; Keurentjes, Joost Jb ; Schneeberger, Korbinian
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2013-12, Vol.2, p.e01426-e01426
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ArticlesPeer ReviewedFull Text
Exome-wide analysis of copy number variation shows association of the human leukocyte antigen region with asthma in UK Biobank
Author / Creator:Fawcett, Katherine A ; Demidov, German ; Shrine, Nick ; Paynton, Megan L ; Ossowski, Stephan ; Sayers, Ian ; Wain, Louise V ; Hollox, Edward J
Publisher:England: BioMed Central Ltd
Journal title:BMC medical genomics, 2022-05, Vol.15 (1), p.119-119, Article 119
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Biallelic loss-of-function LACC1/FAMIN Mutations Presenting as Rheumatoid Factor-Negative Polyarticular Juvenile Idiopathic Arthritis
Author / Creator:Rabionet, Raquel ; Remesal, Agustín ; Mensa-Vilaró, Anna ; Murías, Sara ; Alcobendas, Rosa ; González-Roca, Eva ; Ruiz-Ortiz, Estibaliz ; Antón, Jordi ; Iglesias, Estibaliz ; Modesto, Consuelo ; Comas, David ; Puig, Anna ; Drechsel, Oliver ; Ossowski, Stephan ; Yagüe, Jordi ; Merino, Rosa ; Estivill, Xavier ; Arostegui, Juan I.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-03, Vol.9 (1), p.4579, Article 4579
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ArticlesPeer ReviewedFull Text
Environmental Enrichment Induces Epigenomic and Genome Organization Changes Relevant for Cognition
Author / Creator:Espeso-Gil, Sergio ; Holik, Aliaksei Z ; Bonnin, Sarah ; Jhanwar, Shalu ; Chandrasekaran, Sandhya ; Pique-Regi, Roger ; Albaigès-Ràfols, Júlia ; Maher, Michael ; Permanyer, Jon ; Irimia, Manuel ; Friedländer, Marc R ; Pons-Espinal, Meritxell ; Akbarian, Schahram ; Dierssen, Mara ; Maass, Philipp G ; Hor, Charlotte N ; Ossowski, Stephan
Publisher:Switzerland: Frontiers Research Foundation
Journal title:Frontiers in molecular neuroscience, 2021-05, Vol.14, p.664912
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Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome

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Highly specific gene silencing by artificial miRNAs in rice

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The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

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Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

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Simultaneous alignment of short reads against multiple genomes

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Reference-guided assembly of four diverse Arabidopsis thaliana genomes

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Recombination and linkage disequilibrium in Arabidopsis thaliana

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Tumour-informed liquid biopsies to monitor advanced melanoma patients under immune checkpoint inhibition

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Rare functional genetic variants in COL7A1, COL6A5, COL1A2 and COL5A2 frequently occur in Chiari Malformation Type 1

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Specific Gene Silencing by Artificial MicroRNAs in Physcomitrella patens: An Alternative to Targeted Gene Knockouts

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Targeted next-generation sequencing in steroid-resistant nephrotic syndrome: mutations in multiple glomerular genes may influence disease severity

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Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

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Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells

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Dynamics of cell-free tumor DNA correlate with early MRI response during chemoradiotherapy in rectal cancer

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Efficient and flexible Integration of variant characteristics in rare variant association studies using integrated nested Laplace approximation

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Tracking of Antibiotic Resistance Transfer and Rapid Plasmid Evolution in a Hospital Setting by Nanopore Sequencing

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The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana

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Exome-wide analysis of copy number variation shows association of the human leukocyte antigen region with asthma in UK Biobank

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Biallelic loss-of-function LACC1/FAMIN Mutations Presenting as Rheumatoid Factor-Negative Polyarticular Juvenile Idiopathic Arthritis

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Environmental Enrichment Induces Epigenomic and Genome Organization Changes Relevant for Cognition

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