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ArticlesPeer ReviewedFull Text
FastQ Screen: A tool for multi-genome mapping and quality control
Author / Creator:Wingett, Steven W. ; Andrews, Simon
Publisher:London: Faculty of 1000 Ltd
Journal title:F1000 research, 2018, Vol.7, p.1338
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CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Author / Creator:Cairns, Jonathan ; Freire-Pritchett, Paula ; Wingett, Steven W. ; Várnai, Csilla ; Dimond, Andrew ; Plagnol, Vincent ; Zerbino, Daniel ; Schoenfelder, Stefan ; Javierre, Biola-Maria ; Osborne, Cameron ; Fraser, Peter ; Spivakov, Mikhail
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2016-06, Vol.17 (1), p.127-127, Article 127
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ArticlesPeer ReviewedFull Text
Active and repressed biosynthetic gene clusters have spatially distinct chromosome states
Author / Creator:Nützmann, Hans-Wilhelm ; Doerr, Daniel ; Ramírez-Colmenero, América ; Sotelo-Fonseca, Jesús Emiliano ; Wegel, Eva ; Di Stefano, Marco ; Wingett, Steven W. ; Fraser, Peter ; Hurst, Laurence ; Fernandez-Valverde, Selene L. ; Osbourn, Anne
Publisher:Washington: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2020-06, Vol.117 (24), p.13800-13809
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ArticlesPeer ReviewedFull Text
Comparison of Hi-C results using in-solution versus in-nucleus ligation
Author / Creator:Nagano, Takashi ; Várnai, Csilla ; Schoenfelder, Stefan ; Javierre, Biola-Maria ; Wingett, Steven W. ; Fraser, Peter
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2015-08, Vol.16 (1), p.175-175, Article 175
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ArticlesPeer ReviewedFull Text
Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
Author / Creator:Rubin, Adam J ; Barajas, Brook C ; Furlan-Magaril, Mayra ; Lopez-Pajares, Vanessa ; Mumbach, Maxwell R ; Howard, Imani ; Kim, Daniel S ; Boxer, Lisa D ; Cairns, Jonathan ; Spivakov, Mikhail ; Wingett, Steven W ; Shi, Minyi ; Zhao, Zhixin ; Greenleaf, William J ; Kundaje, Anshul ; Snyder, Michael ; Chang, Howard Y ; Fraser, Peter ; Khavari, Paul A
Publisher:New York: Springer New York
Journal title:Nature genetics, 2017-10, Vol.49 (10), p.1522-1528
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HiCUP: pipeline for mapping and processing Hi-C data [version 1; peer review: 2 approved, 1 approved with reservations]
Author / Creator:Wingett, Steven W ; Ewels, Philip ; Furlan-Magaril, Mayra ; Nagano, Takashi ; Schoenfelder, Stefan ; Fraser, Peter ; Andrews, Simon
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2015, Vol.4, p.1310-1310
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Capture Hi-C identifies putative target genes at 33 breast cancer risk loci
Author / Creator:Baxter, Joseph S. ; Leavy, Olivia C. ; Dryden, Nicola H. ; Maguire, Sarah ; Johnson, Nichola ; Fedele, Vita ; Simigdala, Nikiana ; Martin, Lesley-Ann ; Andrews, Simon ; Wingett, Steven W. ; Assiotis, Ioannis ; Fenwick, Kerry ; Chauhan, Ritika ; Rust, Alistair G. ; Orr, Nick ; Dudbridge, Frank ; Haider, Syed ; Fletcher, Olivia
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-03, Vol.9 (1), p.1028-13, Article 1028
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ArticlesPeer ReviewedFull Text
Neuronal HSF-1 coordinates the propagation of fat desaturation across tissues to enable adaptation to high temperatures in C. elegans
Author / Creator:Chauve, Laetitia ; Hodge, Francesca ; Murdoch, Sharlene ; Masoudzadeh, Fatemeh ; Mann, Harry-Jack ; Lopez-Clavijo, Andrea F. ; Okkenhaug, Hanneke ; West, Greg ; Sousa, Bebiana C. ; Segonds-Pichon, Anne ; Li, Cheryl ; Wingett, Steven W. ; Kienberger, Hermine ; Kleigrewe, Karin ; de Bono, Mario ; Wakelam, Michael J. O. ; Casanueva, Olivia
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2021-11, Vol.19 (11), p.e3001431-e3001431
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ArticlesPeer ReviewedFull Text
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
Author / Creator:Freire-Pritchett, Paula ; Schoenfelder, Stefan ; Várnai, Csilla ; Wingett, Steven W ; Cairns, Jonathan ; Collier, Amanda J ; García-Vílchez, Raquel ; Furlan-Magaril, Mayra ; Osborne, Cameron S ; Fraser, Peter ; Rugg-Gunn, Peter J ; Spivakov, Mikhail
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2017-03, Vol.6
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Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks
Author / Creator:Choy, Mun-Kit ; Javierre, Biola M. ; Williams, Simon G. ; Baross, Stephanie L. ; Liu, Yingjuan ; Wingett, Steven W. ; Akbarov, Artur ; Wallace, Chris ; Freire-Pritchett, Paula ; Rugg-Gunn, Peter J. ; Spivakov, Mikhail ; Fraser, Peter ; Keavney, Bernard D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-06, Vol.9 (1), p.2526-10, Article 2526
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ArticlesPeer ReviewedFull Text
Repression of CADM1 transcription by HPV type 18 is mediated by three-dimensional rearrangement of promoter-enhancer interactions
Author / Creator:Campos-León, Karen ; Ferguson, Jack ; Günther, Thomas ; Wood, C. David ; Wingett, Steven W. ; Pekel, Selin ; Varghese, Christy S. ; Jones, Leanne S. ; Stockton, Joanne D. ; Várnai, Csilla ; West, Michelle J. ; Beggs, Andrew ; Grundhoff, Adam ; Noyvert, Boris ; Roberts, Sally ; Parish, Joanna L.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2025-01, Vol.21 (1), p.e1012506
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ArticlesPeer ReviewedFull Text
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle
Author / Creator:Furlan-Magaril, Mayra ; Ando-Kuri, Masami ; Arzate-Mejía, Rodrigo G. ; Morf, Jörg ; Cairns, Jonathan ; Román-Figueroa, Abraham ; Tenorio-Hernández, Luis ; Poot-Hernández, A. César ; Andrews, Simon ; Várnai, Csilla ; Virk, Boo ; Wingett, Steven W. ; Fraser, Peter
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-06, Vol.22 (1), p.162-162, Article 162
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ArticlesPeer ReviewedFull Text
Chromosome contacts in activated T cells identify autoimmune disease candidate genes
Author / Creator:Burren, Oliver S. ; Rubio García, Arcadio ; Javierre, Biola-Maria ; Rainbow, Daniel B. ; Cairns, Jonathan ; Cooper, Nicholas J. ; Lambourne, John J. ; Schofield, Ellen ; Castro Dopico, Xaquin ; Ferreira, Ricardo C. ; Coulson, Richard ; Burden, Frances ; Rowlston, Sophia P. ; Downes, Kate ; Wingett, Steven W. ; Frontini, Mattia ; Ouwehand, Willem H. ; Fraser, Peter ; Spivakov, Mikhail ; Todd, John A. ; Wicker, Linda S. ; Cutler, Antony J. ; Wallace, Chris
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2017-09, Vol.18 (1), p.165-165, Article 165
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ArticlesPeer ReviewedFull Text
FastQ Screen: A tool for multi-genome mapping and quality control [version 2; peer review: 4 approved]
Author / Creator:Wingett, Steven W ; Andrews, Simon
Publisher:England: F1000 Research Limited
Journal title:F1000 research, 2018, Vol.7, p.1338-1338
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ArticlesPeer ReviewedFull Text
Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells
Author / Creator:Koohy, Hashem ; Bolland, Daniel J. ; Matheson, Louise S. ; Schoenfelder, Stefan ; Stellato, Claudia ; Dimond, Andrew ; Várnai, Csilla ; Chovanec, Peter ; Chessa, Tamara ; Denizot, Jeremy ; Manzano Garcia, Raquel ; Wingett, Steven W. ; Freire-Pritchett, Paula ; Nagano, Takashi ; Hawkins, Phillip ; Stephens, Len ; Elderkin, Sarah ; Spivakov, Mikhail ; Fraser, Peter ; Corcoran, Anne E. ; Varga-Weisz, Patrick D.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-09, Vol.19 (1), p.126-126, Article 126
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Author Correction: Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks
Author / Creator:Choy, Mun-Kit ; Javierre, Biola M. ; Williams, Simon G. ; Baross, Stephanie L. ; Liu, Yingjuan ; Wingett, Steven W. ; Akbarov, Artur ; Wallace, Chris ; Freire-Pritchett, Paula ; Rugg-Gunn, Peter J. ; Spivakov, Mikhail ; Fraser, Peter ; Keavney, Bernard D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-11, Vol.9 (1), p.4792-1, Article 4792
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ArticlesPeer ReviewedFull Text
Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell
Author / Creator:Nagano, Takashi ; Lubling, Yaniv ; Yaffe, Eitan ; Wingett, Steven W ; Dean, Wendy ; Tanay, Amos ; Fraser, Peter
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2015-12, Vol.10 (12), p.1986-2003
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Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
Author / Creator:Mifsud, Borbala ; Tavares-Cadete, Filipe ; Young, Alice N ; Sugar, Robert ; Schoenfelder, Stefan ; Ferreira, Lauren ; Wingett, Steven W ; Andrews, Simon ; Grey, William ; Ewels, Philip A ; Herman, Bram ; Happe, Scott ; Higgs, Andy ; LeProust, Emily ; Follows, George A ; Fraser, Peter ; Luscombe, Nicholas M ; Osborne, Cameron S
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2015-06, Vol.47 (6), p.598-606
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Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
Author / Creator:Schoenfelder, Stefan ; Sugar, Robert ; Dimond, Andrew ; Javierre, Biola-Maria ; Armstrong, Harry ; Mifsud, Borbala ; Dimitrova, Emilia ; Matheson, Louise ; Tavares-Cadete, Filipe ; Furlan-Magaril, Mayra ; Segonds-Pichon, Anne ; Jurkowski, Wiktor ; Wingett, Steven W ; Tabbada, Kristina ; Andrews, Simon ; Herman, Bram ; LeProust, Emily ; Osborne, Cameron S ; Koseki, Haruhiko ; Fraser, Peter ; Luscombe, Nicholas M ; Elderkin, Sarah
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2015-10, Vol.47 (10), p.1179-1186
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The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
Author / Creator:Beekman, Renée ; Chapaprieta, Vicente ; Russiñol, Núria ; Vilarrasa-Blasi, Roser ; Verdaguer-Dot, Núria ; Martens, Joost H. A. ; Duran-Ferrer, Martí ; Kulis, Marta ; Serra, François ; Javierre, Biola M. ; Wingett, Steven W. ; Clot, Guillem ; Queirós, Ana C. ; Castellano, Giancarlo ; Blanc, Julie ; Gut, Marta ; Merkel, Angelika ; Heath, Simon ; Vlasova, Anna ; Ullrich, Sebastian ; Palumbo, Emilio ; Enjuanes, Anna ; Martín-García, David ; Beà, Sílvia ; Pinyol, Magda ; Aymerich, Marta ; Royo, Romina ; Puiggros, Montserrat ; Torrents, David ; Datta, Avik ; Lowy, Ernesto ; Kostadima, Myrto ; Roller, Maša ; Clarke, Laura ; Flicek, Paul ; Agirre, Xabier ; Prosper, Felipe ; Baumann, Tycho ; Delgado, Julio ; López-Guillermo, Armando ; Fraser, Peter ; Yaspo, Marie-Laure ; Guigó, Roderic ; Siebert, Reiner ; Martí-Renom, Marc A. ; Puente, Xose S. ; López-Otín, Carlos ; Gut, Ivo ; Stunnenberg, Hendrik G. ; Campo, Elias ; Martin-Subero, Jose I.
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2018-06, Vol.24 (6), p.868-880
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Showing 1 to 20 of 32 results

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FastQ Screen: A tool for multi-genome mapping and quality control

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CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

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Active and repressed biosynthetic gene clusters have spatially distinct chromosome states

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Comparison of Hi-C results using in-solution versus in-nucleus ligation

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Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation

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HiCUP: pipeline for mapping and processing Hi-C data [version 1; peer review: 2 approved, 1 approved with reservations]

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Capture Hi-C identifies putative target genes at 33 breast cancer risk loci

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Neuronal HSF-1 coordinates the propagation of fat desaturation across tissues to enable adaptation to high temperatures in C. elegans

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Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells

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Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks

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Repression of CADM1 transcription by HPV type 18 is mediated by three-dimensional rearrangement of promoter-enhancer interactions

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The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle

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Chromosome contacts in activated T cells identify autoimmune disease candidate genes

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FastQ Screen: A tool for multi-genome mapping and quality control [version 2; peer review: 4 approved]

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Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells

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Author Correction: Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks

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Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell

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Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C

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Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome

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The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia

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