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28 results for Nakakido,+Makoto

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ArticlesPeer ReviewedFull Text
Development of novel humanized VHH synthetic libraries based on physicochemical analyses
Author / Creator:Nakakido, Makoto ; Kinoshita, Seisho ; Tsumoto, Kouhei
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-08, Vol.14 (1), p.19533-13, Article 19533
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Delicate balance among thermal stability, binding affinity, and conformational space explored by single-domain VHH antibodies
Author / Creator:Ikeuchi, Emina ; Kuroda, Daisuke ; Nakakido, Makoto ; Murakami, Akikazu ; Tsumoto, Kouhei
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-10, Vol.11 (1), p.20624-20624, Article 20624
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Development of a high-throughput method to screen novel antiviral materials
Author / Creator:Nakakido, Makoto ; Tanaka, Naoki ; Shimojo, Ayako ; Miyamae, Nobuhiro ; Tsumoto, Kouhei
Publisher:United States: Public Library of Science
Journal title:PloS one, 2022-04, Vol.17 (4), p.e0266474-e0266474
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Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations
Author / Creator:Yoshida, Kouhei ; Kuroda, Daisuke ; Kiyoshi, Masato ; Nakakido, Makoto ; Nagatoishi, Satoru ; Soga, Shinji ; Shirai, Hiroki ; Tsumoto, Kouhei
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-03, Vol.9 (1), p.4482, Article 4482
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Author Correction: Structure-based design and discovery of novel anti-tissue factor antibodies with cooperative double-point mutations, using interaction analysis
Author / Creator:Chiba, Shuntaro ; Tanabe, Aki ; Nakakido, Makoto ; Okuno, Yasushi ; Tsumoto, Kouhei ; Ohta, Masateru
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-09, Vol.11 (1), p.18153-18153, Article 18153
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Molecular mechanism underlying the increased risk of colorectal cancer metastasis caused by single nucleotide polymorphisms in LI-cadherin gene
Author / Creator:Yui, Anna ; Kuroda, Daisuke ; Maruno, Takahiro ; Nakakido, Makoto ; Nagatoishi, Satoru ; Uchiyama, Susumu ; Tsumoto, Kouhei
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-04, Vol.13 (1), p.6493-11, Article 6493
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Improvement of the affinity of an anti-rat P2X4 receptor antibody by introducing electrostatic interactions
Author / Creator:Shinozaki, Chinatsu ; Kohno, Keita ; Shiroishi, Mitsunori ; Takahashi, Daisuke ; Yoshikawa, Yu ; Abe, Yoshito ; Hamase, Kenji ; Nakakido, Makoto ; Tsumoto, Kohei ; Inoue, Kazuhide ; Tsuda, Makoto ; Ueda, Tadashi
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-01, Vol.12 (1), p.131-10, Article 131
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ArticlesPeer ReviewedFull Text
Structure-based design and discovery of novel anti-tissue factor antibodies with cooperative double-point mutations, using interaction analysis
Author / Creator:Chiba, Shuntaro ; Tanabe, Aki ; Nakakido, Makoto ; Okuno, Yasushi ; Tsumoto, Kouhei ; Ohta, Masateru
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-10, Vol.10 (1), p.17590-17590, Article 17590
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Mitochondrial complexity is regulated at ER-mitochondria contact sites via PDZD8-FKBP8 tethering
Author / Creator:Nakamura, Koki ; Aoyama-Ishiwatari, Saeko ; Nagao, Takahiro ; Paaran, Mohammadreza ; Obara, Christopher J. ; Sakurai-Saito, Yui ; Johnston, Jake ; Du, Yudan ; Suga, Shogo ; Tsuboi, Masafumi ; Nakakido, Makoto ; Tsumoto, Kouhei ; Kishi, Yusuke ; Gotoh, Yukiko ; Kwak, Chulhwan ; Rhee, Hyun-Woo ; Seo, Jeong Kon ; Kosako, Hidetaka ; Potter, Clint ; Carragher, Bridget ; Lippincott-Schwartz, Jennifer ; Polleux, Franck ; Hirabayashi, Yusuke
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-04, Vol.16 (1), p.3401-23, Article 3401
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Specific peptide conjugation to a therapeutic antibody leads to enhanced therapeutic potency and thermal stability by reduced Fc dynamics
Author / Creator:Kiyoshi, Masato ; Nakakido, Makoto ; Rafique, Abdur ; Tada, Minoru ; Aoyama, Michihiko ; Terao, Yosuke ; Nagatoishi, Satoru ; Shibata, Hiroko ; Ide, Teruhiko ; Tsumoto, Kouhei ; Ito, Yuji ; Ishii-Watabe, Akiko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-10, Vol.13 (1), p.16561-16561, Article 16561
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Inactivation and spike protein denaturation of novel coronavirus variants by CuxO/TiO2 nano-photocatalysts
Author / Creator:Tatsuma, Tetsu ; Nakakido, Makoto ; Ichinohe, Takeshi ; Kuroiwa, Yoshinori ; Tomioka, Kengo ; Liu, Chang ; Miyamae, Nobuhiro ; Onuki, Tatsuya ; Tsumoto, Kouhei ; Hashimoto, Kazuhito ; Wakihara, Toru
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-03, Vol.13 (1), p.4033-4033, Article 4033
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ArticlesPeer ReviewedFull Text
Phosphatidylinositol glycan anchor biosynthesis, class X containing complex promotes cancer cell proliferation through suppression of EHD2 and ZIC1, putative tumor suppressors
Author / Creator:Nakakido, Makoto ; Tamura, Kenji ; Chung, Suyoun ; Ueda, Koji ; Fujii, Risa ; Kiyotani, Kazuma ; Nakamura, Yusuke
Publisher:Athens: D.A. Spandidos
Journal title:International journal of oncology, 2016-09, Vol.49 (3), p.868-876
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Affinity Improvement of a Therapeutic Antibody by Structure-Based Computational Design: Generation of Electrostatic Interactions in the Transition State Stabilizes the Antibody-Antigen Complex
Author / Creator:Kiyoshi, Masato ; Caaveiro, Jose M. M. ; Miura, Eri ; Nagatoishi, Satoru ; Nakakido, Makoto ; Soga, Shinji ; Shirai, Hiroki ; Kawabata, Shigeki ; Tsumoto, Kouhei
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-01, Vol.9 (1), p.e87099
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Peripheral administration of nanomicelle-encapsulated anti-Aβ oligomer fragment antibody reduces various toxic Aβ species in the brain
Author / Creator:Amano, Akiko ; Sanjo, Nobuo ; Araki, Wataru ; Anraku, Yasutaka ; Nakakido, Makoto ; Matsubara, Etsuro ; Tomiyama, Takami ; Nagata, Tetsuya ; Tsumoto, Kouhei ; Kataoka, Kazunori ; Yokota, Takanori
Publisher:England: BioMed Central
Journal title:Journal of nanobiotechnology, 2023-01, Vol.21 (1), p.36-36, Article 36
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Ligand Installation to Polymeric Micelles for Pediatric Brain Tumor Targeting
Author / Creator:Watanabe, Takayoshi ; Mizuno, Hayato Laurence ; Norimatsu, Jumpei ; Obara, Takumi ; Cabral, Horacio ; Tsumoto, Kouhei ; Nakakido, Makoto ; Kawauchi, Daisuke ; Anraku, Yasutaka
Publisher:Switzerland: MDPI AG
Journal title:Polymers, 2023-04, Vol.15 (7), p.1808
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ArticlesPeer ReviewedFull Text
Structural basis for the recognition of human hemoglobin by the heme-acquisition protein Shr from Streptococcus pyogenes
Author / Creator:Senoo, Akinobu ; Hoshino, Masato ; Shiomi, Toshiki ; Nakakido, Makoto ; Nagatoishi, Satoru ; Kuroda, Daisuke ; Nakagawa, Ichiro ; Tame, Jeremy R. H. ; Caaveiro, Jose M. M. ; Tsumoto, Kouhei
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-03, Vol.14 (1), p.5374-5374, Article 5374
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Nucleic acid–triggered tumoral immunity propagates pH‐selective therapeutic antibodies through tumor‐driven epitope spreading
Author / Creator:Furuya, Genta ; Katoh, Hiroto ; Atsumi, Shinichiro ; Hashimoto, Itaru ; Komura, Daisuke ; Hatanaka, Ryo ; Senga, Shogo ; Hayashi, Shuto ; Akita, Shoji ; Matsumura, Hirofumi ; Miura, Akihiro ; Mita, Hideaki ; Nakakido, Makoto ; Nagatoishi, Satoru ; Sugiyama, Akira ; Suzuki, Ryohei ; Konishi, Hiroki ; Yamamoto, Asami ; Abe, Hiroyuki ; Hiraoka, Nobuyoshi ; Aoki, Kazunori ; Kato, Yasumasa ; Seto, Yasuyuki ; Yoshimura, Chihoko ; Miyadera, Kazutaka ; Tsumoto, Kouhei ; Ushiku, Tetsuo ; Ishikawa, Shumpei
Publisher:England: John Wiley & Sons, Inc
Journal title:Cancer science, 2023-01, Vol.114 (1), p.321-338
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Molecular basis for governing the morphology of type-I collagen fibrils by Osteomodulin
Author / Creator:Tashima, Takumi ; Nagatoishi, Satoru ; Caaveiro, Jose M. M. ; Nakakido, Makoto ; Sagara, Hiroshi ; Kusano-Arai, Osamu ; Iwanari, Hiroko ; Mimuro, Hitomi ; Hamakubo, Takao ; Ohnuma, Shin-ichi ; Tsumoto, Kouhei
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2018-04, Vol.1 (1), p.33-33, Article 33
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Critical role of lysine 134 methylation on histone H2AX for γ-H2AX production and DNA repair
Author / Creator:Sone, Kenbun ; Piao, Lianhua ; Nakakido, Makoto ; Ueda, Koji ; Jenuwein, Thomas ; Nakamura, Yusuke ; Hamamoto, Ryuji
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2014-12, Vol.5 (1), p.5691-5691, Article 5691
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Dimerization mechanism and structural features of human LI-cadherin
Author / Creator:Yui, Anna ; Caaveiro, Jose M M ; Kuroda, Daisuke ; Nakakido, Makoto ; Nagatoishi, Satoru ; Goda, Shuichiro ; Maruno, Takahiro ; Uchiyama, Susumu ; Tsumoto, Kouhei
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-09
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Showing 1 to 20 of 28 results

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Development of novel humanized VHH synthetic libraries based on physicochemical analyses

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Delicate balance among thermal stability, binding affinity, and conformational space explored by single-domain VHH antibodies

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Development of a high-throughput method to screen novel antiviral materials

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Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations

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Author Correction: Structure-based design and discovery of novel anti-tissue factor antibodies with cooperative double-point mutations, using interaction analysis

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Molecular mechanism underlying the increased risk of colorectal cancer metastasis caused by single nucleotide polymorphisms in LI-cadherin gene

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Improvement of the affinity of an anti-rat P2X4 receptor antibody by introducing electrostatic interactions

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Structure-based design and discovery of novel anti-tissue factor antibodies with cooperative double-point mutations, using interaction analysis

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Mitochondrial complexity is regulated at ER-mitochondria contact sites via PDZD8-FKBP8 tethering

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Specific peptide conjugation to a therapeutic antibody leads to enhanced therapeutic potency and thermal stability by reduced Fc dynamics

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Inactivation and spike protein denaturation of novel coronavirus variants by CuxO/TiO2 nano-photocatalysts

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Phosphatidylinositol glycan anchor biosynthesis, class X containing complex promotes cancer cell proliferation through suppression of EHD2 and ZIC1, putative tumor suppressors

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Affinity Improvement of a Therapeutic Antibody by Structure-Based Computational Design: Generation of Electrostatic Interactions in the Transition State Stabilizes the Antibody-Antigen Complex

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Peripheral administration of nanomicelle-encapsulated anti-Aβ oligomer fragment antibody reduces various toxic Aβ species in the brain

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Ligand Installation to Polymeric Micelles for Pediatric Brain Tumor Targeting

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Structural basis for the recognition of human hemoglobin by the heme-acquisition protein Shr from Streptococcus pyogenes

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Nucleic acid–triggered tumoral immunity propagates pH‐selective therapeutic antibodies through tumor‐driven epitope spreading

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Molecular basis for governing the morphology of type-I collagen fibrils by Osteomodulin

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Critical role of lysine 134 methylation on histone H2AX for γ-H2AX production and DNA repair

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Dimerization mechanism and structural features of human LI-cadherin

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