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ArticlesPeer ReviewedFull Text
Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types
Author / Creator:Ziller, Michael J. ; Müller, Fabian ; Liao, Jing ; Zhang, Yingying ; Gu, Hongcang ; Bock, Christoph ; Boyle, Patrick ; Epstein, Charles B. ; Bernstein, Bradley E. ; Lengauer, Thomas ; Gnirke, Andreas ; Meissner, Alexander
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2011-12, Vol.7 (12), p.e1002389-e1002389
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Transcription factor binding dynamics during human ES cell differentiation
Author / Creator:Tsankov, Alexander M. ; Gu, Hongcang ; Akopian, Veronika ; Ziller, Michael J. ; Donaghey, Julie ; Amit, Ido ; Gnirke, Andreas ; Meissner, Alexander
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2015-02, Vol.518 (7539), p.344-349
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Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
Author / Creator:Ziller, Michael J ; Hansen, Kasper D ; Meissner, Alexander ; Aryee, Martin J
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2015-03, Vol.12 (3), p.230-232
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Charting a dynamic DNA methylation landscape of the human genome
Author / Creator:Ziller, Michael J. ; Gu, Hongcang ; Müller, Fabian ; Donaghey, Julie ; Tsai, Linus T.-Y. ; Kohlbacher, Oliver ; De Jager, Philip L. ; Rosen, Evan D. ; Bennett, David A. ; Bernstein, Bradley E. ; Gnirke, Andreas ; Meissner, Alexander
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2013-08, Vol.500 (7463), p.477-481
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Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells
Author / Creator:Liao, Jing ; Karnik, Rahul ; Gu, Hongcang ; Ziller, Michael J ; Clement, Kendell ; Tsankov, Alexander M ; Akopian, Veronika ; Gifford, Casey A ; Donaghey, Julie ; Galonska, Christina ; Pop, Ramona ; Reyon, Deepak ; Tsai, Shengdar Q ; Mallard, William ; Joung, J Keith ; Rinn, John L ; Gnirke, Andreas ; Meissner, Alexander
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2015-05, Vol.47 (5), p.469-478
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Genetic determinants and epigenetic effects of pioneer-factor occupancy
Author / Creator:Donaghey, Julie ; Thakurela, Sudhir ; Charlton, Jocelyn ; Chen, Jennifer S. ; Smith, Zachary D. ; Gu, Hongcang ; Pop, Ramona ; Clement, Kendell ; Stamenova, Elena K. ; Karnik, Rahul ; Kelley, David R. ; Gifford, Casey A. ; Cacchiarelli, Davide ; Rinn, John L. ; Gnirke, Andreas ; Ziller, Michael J. ; Meissner, Alexander
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2018-02, Vol.50 (2), p.250-258
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Progress in iPSC-Based Modeling of Psychiatric Disorders
Author / Creator:Hoffmann, Anke ; Ziller, Michael ; Spengler, Dietmar
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2019-10, Vol.20 (19), p.4896
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Genome-wide tracking of dCas9-methyltransferase footprints
Author / Creator:Galonska, Christina ; Charlton, Jocelyn ; Mattei, Alexandra L. ; Donaghey, Julie ; Clement, Kendell ; Gu, Hongcang ; Mohammad, Arman W. ; Stamenova, Elena K. ; Cacchiarelli, Davide ; Klages, Sven ; Timmermann, Bernd ; Cantz, Tobias ; Schöler, Hans R. ; Gnirke, Andreas ; Ziller, Michael J. ; Meissner, Alexander
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-02, Vol.9 (1), p.597-9, Article 597
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Primary cilia and SHH signaling impairments in human and mouse models of Parkinson’s disease
Author / Creator:Schmidt, Sebastian ; Luecken, Malte D. ; Trümbach, Dietrich ; Hembach, Sina ; Niedermeier, Kristina M. ; Wenck, Nicole ; Pflügler, Klaus ; Stautner, Constantin ; Böttcher, Anika ; Lickert, Heiko ; Ramirez-Suastegui, Ciro ; Ahmad, Ruhel ; Ziller, Michael J. ; Fitzgerald, Julia C. ; Ruf, Viktoria ; van de Berg, Wilma D. J. ; Jonker, Allert J. ; Gasser, Thomas ; Winner, Beate ; Winkler, Jürgen ; Vogt Weisenhorn, Daniela M. ; Giesert, Florian ; Theis, Fabian J. ; Wurst, Wolfgang
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-08, Vol.13 (1), p.4819-25, Article 4819
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Dissecting neural differentiation regulatory networks through epigenetic footprinting
Author / Creator:Ziller, Michael J. ; Edri, Reuven ; Yaffe, Yakey ; Donaghey, Julie ; Pop, Ramona ; Mallard, William ; Issner, Robbyn ; Gifford, Casey A. ; Goren, Alon ; Xing, Jeffrey ; Gu, Hongcang ; Cacchiarelli, Davide ; Tsankov, Alexander M. ; Epstein, Charles ; Rinn, John L. ; Mikkelsen, Tarjei S. ; Kohlbacher, Oliver ; Gnirke, Andreas ; Bernstein, Bradley E. ; Elkabetz, Yechiel ; Meissner, Alexander
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2015-02, Vol.518 (7539), p.355-359
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Childhood-Onset Schizophrenia: Insights from Induced Pluripotent Stem Cells
Author / Creator:Hoffmann, Anke ; Ziller, Michael ; Spengler, Dietmar
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2018-11, Vol.19 (12), p.3829
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A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation
Author / Creator:Sheng, Chao ; Jungverdorben, Johannes ; Wiethoff, Hendrik ; Lin, Qiong ; Flitsch, Lea J. ; Eckert, Daniela ; Hebisch, Matthias ; Fischer, Julia ; Kesavan, Jaideep ; Weykopf, Beatrice ; Schneider, Linda ; Holtkamp, Dominik ; Beck, Heinz ; Till, Andreas ; Wüllner, Ullrich ; Ziller, Michael J. ; Wagner, Wolfgang ; Peitz, Michael ; Brüstle, Oliver
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-10, Vol.9 (1), p.4047-15, Article 4047
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Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling
Author / Creator:Boyle, Patrick ; Clement, Kendell ; Gu, Hongcang ; Smith, Zachary D ; Ziller, Michael ; Fostel, Jennifer L ; Holmes, Laurie ; Meldrim, Jim ; Kelley, Fontina ; Gnirke, Andreas ; Meissner, Alexander
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2012-10, Vol.13 (10), p.R92-R92, Article R92
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Global delay in nascent strand DNA methylation
Author / Creator:Charlton, Jocelyn ; Downing, Timothy L. ; Smith, Zachary D. ; Gu, Hongcang ; Clement, Kendell ; Pop, Ramona ; Akopian, Veronika ; Klages, Sven ; Santos, David P. ; Tsankov, Alexander M. ; Timmermann, Bernd ; Ziller, Michael J. ; Kiskinis, Evangelos ; Gnirke, Andreas ; Meissner, Alexander
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2018-04, Vol.25 (4), p.327-332
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Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex
Author / Creator:Yuan, Wen ; Ma, Sai ; Brown, Juliana R. ; Kim, Kwanho ; Murek, Vanessa ; Trastulla, Lucia ; Meissner, Alexander ; Lodato, Simona ; Shetty, Ashwin S. ; Levin, Joshua Z. ; Buenrostro, Jason D. ; Ziller, Michael J. ; Arlotta, Paola
Publisher:New York: Nature Publishing Group US
Journal title:Nature neuroscience, 2022-08, Vol.25 (8), p.1049-1058
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Associations of psychiatric disease and ageing with FKBP5 expression converge on superficial layer neurons of the neocortex
Author / Creator:Matosin, Natalie ; Arloth, Janine ; Czamara, Darina ; Edmond, Katrina Z. ; Maitra, Malosree ; Fröhlich, Anna S. ; Martinelli, Silvia ; Kaul, Dominic ; Bartlett, Rachael ; Curry, Amber R. ; Gassen, Nils C. ; Hafner, Kathrin ; Müller, Nikola S. ; Worf, Karolina ; Rehawi, Ghalia ; Nagy, Corina ; Halldorsdottir, Thorhildur ; Cruceanu, Cristiana ; Gagliardi, Miriam ; Gerstner, Nathalie ; Ködel, Maik ; Murek, Vanessa ; Ziller, Michael J. ; Scarr, Elizabeth ; Tao, Ran ; Jaffe, Andrew E. ; Arzberger, Thomas ; Falkai, Peter ; Kleinmann, Joel E. ; Weinberger, Daniel R. ; Mechawar, Naguib ; Schmitt, Andrea ; Dean, Brian ; Turecki, Gustavo ; Hyde, Thomas M. ; Binder, Elisabeth B.
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Acta neuropathologica, 2023-04, Vol.145 (4), p.439-459
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Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors
Author / Creator:Edri, Reuven ; Yaffe, Yakey ; Ziller, Michael J. ; Mutukula, Naresh ; Volkman, Rotem ; David, Eyal ; Jacob-Hirsch, Jasmine ; Malcov, Hagar ; Levy, Carmit ; Rechavi, Gideon ; Gat-Viks, Irit ; Meissner, Alexander ; Elkabetz, Yechiel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-03, Vol.6 (1), p.6500-6500, Article 6500
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Information recovery from low coverage whole-genome bisulfite sequencing
Author / Creator:Libertini, Emanuele ; Heath, Simon C. ; Hamoudi, Rifat A. ; Gut, Marta ; Ziller, Michael J. ; Czyz, Agata ; Ruotti, Victor ; Stunnenberg, Hendrik G. ; Frontini, Mattia ; Ouwehand, Willem H. ; Meissner, Alexander ; Gut, Ivo G. ; Beck, Stephan
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-06, Vol.7 (1), p.11306-11306, Article 11306
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ArticlesPeer ReviewedFull Text
Tracing Early Neurodevelopment in Schizophrenia with Induced Pluripotent Stem Cells
Author / Creator:Ahmad, Ruhel ; Sportelli, Vincenza ; Ziller, Michael ; Spengler, Dietmar ; Hoffmann, Anke
Publisher:Switzerland: MDPI AG
Journal title:Cells (Basel, Switzerland), 2018-09, Vol.7 (9), p.140
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Focus on Causality in ESC/iPSC-Based Modeling of Psychiatric Disorders
Author / Creator:Hoffmann, Anke ; Ziller, Michael ; Spengler, Dietmar
Publisher:Switzerland: MDPI
Journal title:Cells (Basel, Switzerland), 2020-02, Vol.9 (2), p.366
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Showing 1 to 20 of 44 results

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Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

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Transcription factor binding dynamics during human ES cell differentiation

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Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing

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Charting a dynamic DNA methylation landscape of the human genome

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Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

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Genetic determinants and epigenetic effects of pioneer-factor occupancy

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Progress in iPSC-Based Modeling of Psychiatric Disorders

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Genome-wide tracking of dCas9-methyltransferase footprints

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Primary cilia and SHH signaling impairments in human and mouse models of Parkinson’s disease

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Dissecting neural differentiation regulatory networks through epigenetic footprinting

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Childhood-Onset Schizophrenia: Insights from Induced Pluripotent Stem Cells

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A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation

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Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

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Global delay in nascent strand DNA methylation

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Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex

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Associations of psychiatric disease and ageing with FKBP5 expression converge on superficial layer neurons of the neocortex

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Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

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Information recovery from low coverage whole-genome bisulfite sequencing

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Tracing Early Neurodevelopment in Schizophrenia with Induced Pluripotent Stem Cells

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Focus on Causality in ESC/iPSC-Based Modeling of Psychiatric Disorders

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