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ArticlesPeer ReviewedFull Text
Microglia and macrophages promote corralling, wound compaction and recovery after spinal cord injury via Plexin-B2
Author / Creator:Zhou, Xiang ; Wahane, Shalaka ; Friedl, Marie-Sophie ; Kluge, Michael ; Friedel, Caroline C. ; Avrampou, Kleopatra ; Zachariou, Venetia ; Guo, Lei ; Zhang, Bin ; He, Xijing ; Friedel, Roland H. ; Zou, Hongyan
Publisher:New York: Nature Publishing Group US
Journal title:Nature neuroscience, 2020-03, Vol.23 (3), p.337-350
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ArticlesPeer ReviewedFull Text
Quantitative proteomics of the integrin adhesome show a myosin II-dependent recruitment of LIM domain proteins
Author / Creator:Schiller, Herbert B ; Friedel, Caroline C ; Boulegue, Cyril ; Fässler, Reinhard
Publisher:Chichester, UK: John Wiley & Sons, Ltd
Journal title:EMBO reports, 2011-03, Vol.12 (3), p.259-266
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Widespread disruption of host transcription termination in HSV-1 infection
Author / Creator:Rutkowski, Andrzej J. ; Erhard, Florian ; L’Hernault, Anne ; Bonfert, Thomas ; Schilhabel, Markus ; Crump, Colin ; Rosenstiel, Philip ; Efstathiou, Stacey ; Zimmer, Ralf ; Friedel, Caroline C. ; Dölken, Lars
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-05, Vol.6 (1), p.7126-7126, Article 7126
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Watchdog – a workflow management system for the distributed analysis of large-scale experimental data
Author / Creator:Kluge, Michael ; Friedel, Caroline C.
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2018-03, Vol.19 (1), p.97-97, Article 97
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A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq
Author / Creator:Lindner, Robert ; Friedel, Caroline C.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-12, Vol.7 (12), p.e52403-e52403
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HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes
Author / Creator:Hennig, Thomas ; Michalski, Marco ; Rutkowski, Andrzej J. ; Djakovic, Lara ; Whisnant, Adam W. ; Friedl, Marie-Sophie ; Jha, Bhaskar Anand ; Baptista, Marisa A. P. ; L’Hernault, Anne ; Erhard, Florian ; Dölken, Lars ; Friedel, Caroline C.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2018-03, Vol.14 (3), p.e1006954-e1006954
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Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27
Author / Creator:Wang, Xiuye ; Hennig, Thomas ; Whisnant, Adam W. ; Erhard, Florian ; Prusty, Bhupesh K. ; Friedel, Caroline C. ; Forouzmand, Elmira ; Hu, William ; Erber, Luke ; Chen, Yue ; Sandri-Goldin, Rozanne M. ; Dölken, Lars ; Shi, Yongsheng
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-01, Vol.11 (1), p.293-293, Article 293
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ArticlesPeer ReviewedFull Text
Prediction of Poly(A) Sites by Poly(A) Read Mapping
Author / Creator:Bonfert, Thomas ; Friedel, Caroline C.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-01, Vol.12 (1), p.e0170914-e0170914
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ContextMap 2: fast and accurate context-based RNA-seq mapping
Author / Creator:Bonfert, Thomas ; Kirner, Evelyn ; Csaba, Gergely ; Zimmer, Ralf ; Friedel, Caroline C
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2015-04, Vol.16 (1), p.122-122, Article 122
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HSV-1 and influenza infection induce linear and circular splicing of the long NEAT1 isoform
Author / Creator:Friedl, Marie-Sophie ; Djakovic, Lara ; Kluge, Michael ; Hennig, Thomas ; Whisnant, Adam W. ; Backes, Simone ; Dölken, Lars ; Friedel, Caroline C.
Publisher:San Francisco: Public Library of Science
Journal title:PloS one, 2022-10, Vol.17 (10), p.e0276467-e0276467
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The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes
Author / Creator:Djakovic, Lara ; Hennig, Thomas ; Reinisch, Katharina ; Milić, Andrea ; Whisnant, Adam W. ; Wolf, Katharina ; Weiß, Elena ; Haas, Tobias ; Grothey, Arnhild ; Jürges, Christopher S. ; Kluge, Michael ; Wolf, Elmar ; Erhard, Florian ; Friedel, Caroline C. ; Dölken, Lars
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-07, Vol.14 (1), p.4591-4591, Article 4591
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ArticlesPeer ReviewedFull Text
Merkel cell polyomavirus small tumor antigen contributes to immune evasion by interfering with type I interferon signaling
Author / Creator:Ohnezeit, Denise ; Huang, Jiabin ; Westerkamp, Ute ; Brinschwitz, Veronika ; Schmidt, Claudia ; Günther, Thomas ; Czech-Sioli, Manja ; Weißelberg, Samira ; Schlemeyer, Tabea ; Nakel, Jacqueline ; Mai, Julia ; Schreiner, Sabrina ; Schneider, Carola ; Friedel, Caroline C. ; Schwanke, Hella ; Brinkmann, Melanie M. ; Grundhoff, Adam ; Fischer, Nicole
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2024-08, Vol.20 (8), p.e1012426
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Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation
Author / Creator:Wang, Xiuye ; Liu, Liang ; Whisnant, Adam W. ; Hennig, Thomas ; Djakovic, Lara ; Haque, Nabila ; Bach, Cindy ; Sandri-Goldin, Rozanne M. ; Erhard, Florian ; Friedel, Caroline C. ; Dölken, Lars ; Shi, Yongsheng
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2021-03, Vol.17 (3), p.e1009263-e1009263
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ArticlesPeer ReviewedFull Text
Calpain-mediated cleavage of collapsin response mediator protein-2 drives acute axonal degeneration
Author / Creator:Zhang, Jian-Nan ; Michel, Uwe ; Lenz, Christof ; Friedel, Caroline C. ; Köster, Sarah ; d’Hedouville, Zara ; Tönges, Lars ; Urlaub, Henning ; Bähr, Mathias ; Lingor, Paul ; Koch, Jan C.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2016-11, Vol.6 (1), p.37050-37050, Article 37050
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ArticlesPeer ReviewedFull Text
Decoding murine cytomegalovirus
Author / Creator:Lodha, Manivel ; Muchsin, Ihsan ; Jürges, Christopher ; Juranic Lisnic, Vanda ; L’Hernault, Anne ; Rutkowski, Andrzej J. ; Prusty, Bhupesh K. ; Grothey, Arnhild ; Milic, Andrea ; Hennig, Thomas ; Jonjic, Stipan ; Friedel, Caroline C. ; Erhard, Florian ; Dölken, Lars
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2023-05, Vol.19 (5), p.e1010992-e1010992
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ArticlesPeer ReviewedFull Text
Evolutionarily Conserved Herpesviral Protein Interaction Networks
Author / Creator:Fossum, Even ; Friedel, Caroline C. ; Rajagopala, Seesandra V. ; Titz, Björn ; Baiker, Armin ; Schmidt, Tina ; Kraus, Theo ; Stellberger, Thorsten ; Rutenberg, Christiane ; Suthram, Silpa ; Bandyopadhyay, Sourav ; Rose, Dietlind ; von Brunn, Albrecht ; Uhlmann, Mareike ; Zeretzke, Christine ; Dong, Yu-An ; Boulet, Hélène ; Koegl, Manfred ; Bailer, Susanne M. ; Koszinowski, Ulrich ; Ideker, Trey ; Uetz, Peter ; Zimmer, Ralf ; Haas, Jürgen
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2009-09, Vol.5 (9), p.e1000570-e1000570
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A Systematic Analysis of Host Factors Reveals a Med23-Interferon-λ Regulatory Axis against Herpes Simplex Virus Type 1 Replication
Author / Creator:Griffiths, Samantha J. ; Koegl, Manfred ; Boutell, Chris ; Zenner, Helen L. ; Crump, Colin M. ; Pica, Francesca ; Gonzalez, Orland ; Friedel, Caroline C. ; Barry, Gerald ; Martin, Kim ; Craigon, Marie H. ; Chen, Rui ; Kaza, Lakshmi N. ; Fossum, Even ; Fazakerley, John K. ; Efstathiou, Stacey ; Volpi, Antonio ; Zimmer, Ralf ; Ghazal, Peter ; Haas, Jürgen
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2013-08, Vol.9 (8), p.e1003514
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Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1
Author / Creator:Decker, Tim-Michael ; Kluge, Michael ; Krebs, Stefan ; Shah, Nilay ; Blum, Helmut ; Friedel, Caroline C. ; Eick, Dirk
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-05, Vol.7 (1), p.1684-9, Article 1684
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Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome
Author / Creator:von Brunn, Albrecht ; Teepe, Carola ; Simpson, Jeremy C. ; Pepperkok, Rainer ; Friedel, Caroline C. ; Zimmer, Ralf ; Roberts, Rhonda ; Baric, Ralph ; Haas, Jürgen
Publisher:United States: Public Library of Science
Journal title:PloS one, 2007-05, Vol.2 (5), p.e459-e459
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Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm
Author / Creator:Spasic, Milan ; Friedel, Caroline C. ; Schott, Johanna ; Kreth, Jochen ; Leppek, Kathrin ; Hofmann, Sarah ; Ozgur, Sevim ; Stoecklin, Georg
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2012-01, Vol.8 (1), p.e1002433-e1002433
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Showing 1 to 20 of 62 results

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Microglia and macrophages promote corralling, wound compaction and recovery after spinal cord injury via Plexin-B2

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Quantitative proteomics of the integrin adhesome show a myosin II-dependent recruitment of LIM domain proteins

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Widespread disruption of host transcription termination in HSV-1 infection

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Watchdog – a workflow management system for the distributed analysis of large-scale experimental data

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A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

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HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes

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Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27

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Prediction of Poly(A) Sites by Poly(A) Read Mapping

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ContextMap 2: fast and accurate context-based RNA-seq mapping

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HSV-1 and influenza infection induce linear and circular splicing of the long NEAT1 isoform

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The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes

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Merkel cell polyomavirus small tumor antigen contributes to immune evasion by interfering with type I interferon signaling

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Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation

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Calpain-mediated cleavage of collapsin response mediator protein-2 drives acute axonal degeneration

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Decoding murine cytomegalovirus

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Evolutionarily Conserved Herpesviral Protein Interaction Networks

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A Systematic Analysis of Host Factors Reveals a Med23-Interferon-λ Regulatory Axis against Herpes Simplex Virus Type 1 Replication

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Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1

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Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome

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Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm

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