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29 results for Rocha,+Pedro+P.

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ArticlesPeer ReviewedFull Text
CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci
Author / Creator:Fu, Yi ; Rocha, Pedro P. ; Luo, Vincent M. ; Raviram, Ramya ; Deng, Yan ; Mazzoni, Esteban O. ; Skok, Jane A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-05, Vol.7 (1), p.11707-11707, Article 11707
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MLL3/MLL4 methyltransferase activities control early embryonic development and embryonic stem cell differentiation in a lineage-selective manner
Author / Creator:Xie, Guojia ; Lee, Ji-Eun ; Senft, Anna D. ; Park, Young-Kwon ; Jang, Younghoon ; Chakraborty, Shreeta ; Thompson, Joyce J. ; McKernan, Kaitlin ; Liu, Chengyu ; Macfarlan, Todd S. ; Rocha, Pedro P. ; Peng, Weiqun ; Ge, Kai
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2023-04, Vol.55 (4), p.693-705
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Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages
Author / Creator:Thompson, Joyce J. ; Lee, Daniel J. ; Mitra, Apratim ; Frail, Sarah ; Dale, Ryan K. ; Rocha, Pedro P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-07, Vol.13 (1), p.4257-18, Article 4257
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4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments
Author / Creator:Raviram, Ramya ; Rocha, Pedro P. ; Müller, Christian L. ; Miraldi, Emily R. ; Badri, Sana ; Fu, Yi ; Swanzey, Emily ; Proudhon, Charlotte ; Snetkova, Valentina ; Bonneau, Richard ; Skok, Jane A.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2016-03, Vol.12 (3), p.e1004780-e1004780
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An epigenome atlas of neural progenitors within the embryonic mouse forebrain
Author / Creator:Rhodes, Christopher T. ; Thompson, Joyce J. ; Mitra, Apratim ; Asokumar, Dhanya ; Lee, Dongjin R. ; Lee, Daniel J. ; Zhang, Yajun ; Jason, Eva ; Dale, Ryan K. ; Rocha, Pedro P. ; Petros, Timothy J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-07, Vol.13 (1), p.4196-4196, Article 4196
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Cavβ1 regulates T cell expansion and apoptosis independently of voltage-gated Ca2+ channel function
Author / Creator:Erdogmus, Serap ; Concepcion, Axel R. ; Yamashita, Megumi ; Sidhu, Ikjot ; Tao, Anthony Y. ; Li, Wenyi ; Rocha, Pedro P. ; Huang, Bonnie ; Garippa, Ralph ; Lee, Boram ; Lee, Amy ; Hell, Johannes W. ; Lewis, Richard S. ; Prakriya, Murali ; Feske, Stefan
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-04, Vol.13 (1), p.2033-19, Article 2033
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Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate
Author / Creator:Raviram, Ramya ; Rocha, Pedro P. ; Luo, Vincent M. ; Swanzey, Emily ; Miraldi, Emily R. ; Chuong, Edward B. ; Feschotte, Cédric ; Bonneau, Richard ; Skok, Jane A.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-12, Vol.19 (1), p.216-216, Article 216
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Loss of Ezh2 in the medial ganglionic eminence alters interneuron fate, cell morphology and gene expression profiles
Author / Creator:Rhodes, Christopher T. ; Asokumar, Dhanya ; Sohn, Mira ; Naskar, Shovan ; Elisha, Lielle ; Stevenson, Parker ; Lee, Dongjin R. ; Zhang, Yajun ; Rocha, Pedro P. ; Dale, Ryan K. ; Lee, Soohyun ; Petros, Timothy J.
Publisher:Switzerland: Frontiers Media S.A
Journal title:Frontiers in cellular neuroscience, 2024-02, Vol.18, p.1334244-1334244
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CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
Author / Creator:Narendra, Varun ; Rocha, Pedro P. ; An, Disi ; Raviram, Ramya ; Skok, Jane A. ; Mazzoni, Esteban O. ; Reinberg, Danny
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2015-02, Vol.347 (6225), p.1017-1021
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Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers
Author / Creator:Veliça, Pedro ; Davies, Nicholas J ; Rocha, Pedro P ; Schrewe, Heinrich ; Ride, Jonathan P ; Bunce, Chris M
Publisher:England: BioMed Central Ltd
Journal title:Molecular cancer, 2009-12, Vol.8 (1), p.121-121, Article 121
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Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness
Author / Creator:Chakraborty, Shreeta ; Kopitchinski, Nina ; Zuo, Zhenyu ; Eraso, Ariel ; Awasthi, Parirokh ; Chari, Raj ; Mitra, Apratim ; Tobias, Ian C. ; Moorthy, Sakthi D. ; Dale, Ryan K. ; Mitchell, Jennifer A. ; Petros, Timothy J. ; Rocha, Pedro P.
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2023-02, Vol.55 (2), p.280-290
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Breaking TADs: insights into hierarchical genome organization
Author / Creator:Rocha, Pedro P ; Raviram, Ramya ; Bonneau, Richard ; Skok, Jane A
Publisher:England: Future Medicine Ltd
Journal title:Epigenomics, 2015-06, Vol.7 (4), p.523-526
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Finding the Right Partner in a 3D Genome
Author / Creator:Rocha, Pedro P. ; Chaumeil, Julie ; Skok, Jane A.
Publisher:Washington: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2013-12, Vol.342 (6164), p.1333-1334
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Interpreting 4C-Seq data: how far can we go?
Author / Creator:Raviram, Ramya ; Rocha, Pedro P ; Bonneau, Richard ; Skok, Jane A
Publisher:England: Future Medicine Ltd
Journal title:Epigenomics, 2014-10, Vol.6 (5), p.455-457
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Rapid redistribution and extensive binding of NANOG and GATA6 at shared regulatory elements underlie specification of divergent cell fates
Author / Creator:Thompson, Joyce J ; Lee, Daniel J ; Mitra, Apratim ; Frail, Sarah ; Ryan, Dale ; Rocha, Pedro P
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-08
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Erratum to: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers
Author / Creator:Veliça, Pedro ; Davies, Nicholas J ; Rocha, Pedro P ; Schrewe, Heinrich ; Ride, Jonathan P ; Bunce, Chris M
Journal title:Molecular cancer, 2010-01, Vol.9 (1), Article 21
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Is there an indication of the origin of nutrient supply in different morphological structures of macrofauna at two different Brazilian southeastern sandy beaches? Comparison by C and N stable isotopes
Author / Creator:Almeida, Tito C. M. ; Rocha, Pedro F. P. ; Zalmon, Ilana R. ; Almeida, Marcelo G. ; Rezende, Carlos E. ; Radetski, Claudemir M.
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Environmental science and pollution research international, 2019-11, Vol.26 (32), p.33023-33029
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Correction: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers
Author / Creator:Veliça, Pedro ; Davies, Nicholas J ; Rocha, Pedro P ; Schrewe, Heinrich ; Ride, Jonathan P ; Bunce, Chris M
Publisher:London: BioMed Central Ltd
Journal title:Molecular cancer, 2010-01, Vol.9 (1), p.21-21
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Regulation of human development by ubiquitin chain editing of chromatin remodelers
Author / Creator:Beck, David ; Basar, Mohammed A ; Asmar, Anthony J ; Thompson, Joyce ; Oda, Hirotsugu ; Uehara, Daniela T ; Saida, Ken ; Bodurtha, Joann ; Souza, Precilla D ; Mu, Weiyi ; Baranano, Kristin W ; Miyake, Noriko ; Wang, Raymond ; Kempers, Marlies ; Nishimura, Yutaka ; Okada, Satoshi ; Kosho, Tomoki ; Ryan, Dale ; Mitra, Apratim ; Macnamara, Ellen ; Undiagnosed Diseases Network ; Matsumoto, Naomichi ; Inazawa, Johi ; Walkiewicz, Magdalena ; Tifft, Cynthia J ; Aksentijevich, Ivona ; Kastner, Daniel L ; Rocha, Pedro P ; Werner, Achim
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-01
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MLL3/MLL4 methyltransferase activities control early embryonic development and embryonic stem cell differentiation in a lineage-selective manner
Author / Creator:Xie, Guojia ; Lee, Ji-Eun ; Senft, Anna D ; Young-Kwon, Park ; Chakraborty, Shreeta ; Thompson, Joyce J ; Liu, Chengyu ; Macfarlan, Todd S ; Rocha, Pedro P ; Peng, Weiqun ; Ge, Kai
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-10
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Showing 1 to 20 of 29 results

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CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci

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MLL3/MLL4 methyltransferase activities control early embryonic development and embryonic stem cell differentiation in a lineage-selective manner

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Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages

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4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments

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An epigenome atlas of neural progenitors within the embryonic mouse forebrain

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Cavβ1 regulates T cell expansion and apoptosis independently of voltage-gated Ca2+ channel function

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Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

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Loss of Ezh2 in the medial ganglionic eminence alters interneuron fate, cell morphology and gene expression profiles

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CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

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Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

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Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness

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Breaking TADs: insights into hierarchical genome organization

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Finding the Right Partner in a 3D Genome

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Interpreting 4C-Seq data: how far can we go?

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Rapid redistribution and extensive binding of NANOG and GATA6 at shared regulatory elements underlie specification of divergent cell fates

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Erratum to: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

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Is there an indication of the origin of nutrient supply in different morphological structures of macrofauna at two different Brazilian southeastern sandy beaches? Comparison by C and N stable isotopes

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Correction: Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers

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Regulation of human development by ubiquitin chain editing of chromatin remodelers

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MLL3/MLL4 methyltransferase activities control early embryonic development and embryonic stem cell differentiation in a lineage-selective manner

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