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110 results for Shirahige,+Katsuhiko

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ArticlesPeer ReviewedFull Text
Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation
Author / Creator:Nakato, Ryuichiro ; Shirahige, Katsuhiko
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2017-03, Vol.18 (2), p.279-290
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The maintenance of chromosome structure: positioning and functioning of SMC complexes
Author / Creator:Jeppsson, Kristian ; Kanno, Takaharu ; Shirahige, Katsuhiko ; Sjögren, Camilla
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Molecular cell biology, 2014-09, Vol.15 (9), p.601-614
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Mapping of histone-binding sites in histone replacement-completed spermatozoa
Author / Creator:Yoshida, Keisuke ; Muratani, Masafumi ; Araki, Hiromitsu ; Miura, Fumihito ; Suzuki, Takehiro ; Dohmae, Naoshi ; Katou, Yuki ; Shirahige, Katsuhiko ; Ito, Takashi ; Ishii, Shunsuke
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-09, Vol.9 (1), p.3885-11, Article 3885
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Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity
Author / Creator:Tanaka, Shinya ; Ise, Wataru ; Inoue, Takeshi ; Ito, Ayako ; Ono, Chisato ; Shima, Yoshihito ; Sakakibara, Shuhei ; Nakayama, Manabu ; Fujii, Kentaro ; Miura, Ikuo ; Sharif, Jafar ; Koseki, Haruhiko ; Koni, Pandelakis A. ; Raman, Indu ; Li, Quan-Zhen ; Kubo, Masato ; Fujiki, Katsunori ; Nakato, Ryuichiro ; Shirahige, Katsuhiko ; Araki, Hiromitsu ; Miura, Fumihito ; Ito, Takashi ; Kawakami, Eiryo ; Baba, Yoshihiro ; Kurosaki, Tomohiro
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2020-08, Vol.21 (8), p.950-961
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PHOSPHATE exporter XPR1/SLC53A1 is required for the tumorigenicity of epithelial ovarian cancer
Author / Creator:Akasu‐Nagayoshi, Yoko ; Hayashi, Tomoatsu ; Kawabata, Ayako ; Shimizu, Naomi ; Yamada, Ai ; Yokota, Naoko ; Nakato, Ryuichiro ; Shirahige, Katsuhiko ; Okamoto, Aikou ; Akiyama, Tetsu
Publisher:England: John Wiley & Sons, Inc
Journal title:Cancer science, 2022-06, Vol.113 (6), p.2034-2043
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The HSF1–PARP13–PARP1 complex facilitates DNA repair and promotes mammary tumorigenesis
Author / Creator:Fujimoto, Mitsuaki ; Takii, Ryosuke ; Takaki, Eiichi ; Katiyar, Arpit ; Nakato, Ryuichiro ; Shirahige, Katsuhiko ; Nakai, Akira
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-11, Vol.8 (1), p.1638-16, Article 1638
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Transcription-dependent cohesin repositioning rewires chromatin loops in cellular senescence
Author / Creator:Olan, Ioana ; Parry, Aled J. ; Schoenfelder, Stefan ; Narita, Masako ; Ito, Yoko ; Chan, Adelyne S. L. ; Slater, Guy St.C. ; Bihary, Dóra ; Bando, Masashige ; Shirahige, Katsuhiko ; Kimura, Hiroshi ; Samarajiwa, Shamith A. ; Fraser, Peter ; Narita, Masashi
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-11, Vol.11 (1), p.6049-14, Article 6049
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The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory
Author / Creator:Yoshida, Keisuke ; Maekawa, Toshio ; Zhu, Yujuan ; Renard-Guillet, Claire ; Chatton, Bruno ; Inoue, Kentaro ; Uchiyama, Takeru ; Ishibashi, Ken-ichi ; Yamada, Takuji ; Ohno, Naohito ; Shirahige, Katsuhiko ; Okada-Hatakeyama, Mariko ; Ishii, Shunsuke
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2015-10, Vol.16 (10), p.1034-1043
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ArticlesPeer ReviewedFull Text
Large-scale multi-omics analysis suggests specific roles for intragenic cohesin in transcriptional regulation
Author / Creator:Wang, Jiankang ; Bando, Masashige ; Shirahige, Katsuhiko ; Nakato, Ryuichiro
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-06, Vol.13 (1), p.3218-3218, Article 3218
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HSF1 phosphorylation establishes an active chromatin state via the TRRAP–TIP60 complex and promotes tumorigenesis
Author / Creator:Fujimoto, Mitsuaki ; Takii, Ryosuke ; Matsumoto, Masaki ; Okada, Mariko ; Nakayama, Keiich I. ; Nakato, Ryuichiro ; Fujiki, Katsunori ; Shirahige, Katsuhiko ; Nakai, Akira
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-07, Vol.13 (1), p.4355-4355, Article 4355
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ArticlesPeer ReviewedFull Text
Rif1 binds to G quadruplexes and suppresses replication over long distances
Author / Creator:Kanoh, Yutaka ; Matsumoto, Seiji ; Fukatsu, Rino ; Kakusho, Naoko ; Kono, Nobuaki ; Renard-Guillet, Claire ; Masuda, Koji ; Iida, Keisuke ; Nagasawa, Kazuo ; Shirahige, Katsuhiko ; Masai, Hisao
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2015-11, Vol.22 (11), p.889-897
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ArticlesPeer ReviewedFull Text
Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation
Author / Creator:Kanatsu-Shinohara, Mito ; Yamamoto, Takuya ; Toh, Hidehiro ; Kazuki, Yasuhiro ; Kazuki, Kanako ; Imoto, Junichi ; Ikeo, Kazuho ; Oshima, Motohiko ; Shirahige, Katsuhiko ; Iwama, Atsushi ; Nabeshima, Yoichi ; Sasaki, Hiroyuki ; Shinohara, Takashi
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2019-08, Vol.116 (33), p.16404-16409
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ArticlesPeer ReviewedFull Text
Pericentromeric noncoding RNA changes DNA binding of CTCF and inflammatory gene expression in senescence and cancer
Author / Creator:Miyata, Kenichi ; Imai, Yoshinori ; Satoshi Hori, Mika Nishio ; Loo, Tze Mun ; Okada, Ryo ; Yang, Liying ; Nakadai, Tomoyoshi ; Maruyama, Reo ; Fujii, Risa ; Ueda, Koji ; Jiang, Li ; Zheng, Hao ; Toyokuni, Shinya ; Sakata, Toyonori ; Shirahige, Katsuhiko ; Kojima, Ryosuke ; Nakayama, Mizuho ; Oshima, Masanobu ; Nagayama, Satoshi ; Seimiya, Hiroyuki ; Hirota, Toru ; Saya, Hideyuki ; Hara, Eiji ; Takahashi, Akiko
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2021-08, Vol.118 (35), p.1-9
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ASBEL–TCF3 complex is required for the tumorigenicity of colorectal cancer cells
Author / Creator:Taniue, Kenzui ; Kurimoto, Akiko ; Takeda, Yasuko ; Nagashima, Takeshi ; Okada-Hatakeyama, Mariko ; Katou, Yuki ; Shirahige, Katsuhiko ; Akiyama, Tetsu
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2016-11, Vol.113 (45), p.12739-12744
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Chromosome-associated RNA–protein complexes promote pairing of homologous chromosomes during meiosis in Schizosaccharomyces pombe
Author / Creator:Ding, Da-Qiao ; Okamasa, Kasumi ; Katou, Yuki ; Oya, Eriko ; Nakayama, Jun-ichi ; Chikashige, Yuji ; Shirahige, Katsuhiko ; Haraguchi, Tokuko ; Hiraoka, Yasushi
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-12, Vol.10 (1), p.5598-12, Article 5598
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Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster
Author / Creator:Mishiro, Tsuyoshi ; Ishihara, Ko ; Hino, Shinjiro ; Tsutsumi, Shuichi ; Aburatani, Hiroyuki ; Shirahige, Katsuhiko ; Kinoshita, Yoshikazu ; Nakao, Mitsuyoshi
Publisher:Chichester, UK: John Wiley & Sons, Ltd
Journal title:The EMBO journal, 2009-05, Vol.28 (9), p.1234-1245
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Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms
Author / Creator:Kon, Ayana ; Shih, Lee-Yung ; Minamino, Masashi ; Sanada, Masashi ; Shiraishi, Yuichi ; Nagata, Yasunobu ; Yoshida, Kenichi ; Okuno, Yusuke ; Bando, Masashige ; Nakato, Ryuichiro ; Ishikawa, Shumpei ; Sato-Otsubo, Aiko ; Nagae, Genta ; Nishimoto, Aiko ; Haferlach, Claudia ; Nowak, Daniel ; Sato, Yusuke ; Alpermann, Tamara ; Nagasaki, Masao ; Shimamura, Teppei ; Tanaka, Hiroko ; Chiba, Kenichi ; Yamamoto, Ryo ; Yamaguchi, Tomoyuki ; Otsu, Makoto ; Obara, Naoshi ; Sakata-Yanagimoto, Mamiko ; Nakamaki, Tsuyoshi ; Ishiyama, Ken ; Nolte, Florian ; Hofmann, Wolf-Karsten ; Miyawaki, Shuichi ; Chiba, Shigeru ; Mori, Hiraku ; Nakauchi, Hiromitsu ; Koeffler, H Phillip ; Aburatani, Hiroyuki ; Haferlach, Torsten ; Shirahige, Katsuhiko ; Miyano, Satoru ; Ogawa, Seishi
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2013-10, Vol.45 (10), p.1232-1237
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interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration
Author / Creator:Tsujioka, Hiroshi ; Kunieda, Takekazu ; Katou, Yuki ; Shirahige, Katsuhiko ; Fukazawa, Taro ; Kubo, Takeo
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-09, Vol.8 (1), p.495-12, Article 495
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Cohesin mediates transcriptional insulation by CCCTC-binding factor
Author / Creator:Wendt, Kerstin S. ; Yoshida, Keisuke ; Itoh, Takehiko ; Bando, Masashige ; Koch, Birgit ; Schirghuber, Erika ; Tsutsumi, Shuichi ; Nagae, Genta ; Ishihara, Ko ; Mishiro, Tsuyoshi ; Yahata, Kazuhide ; Imamoto, Fumio ; Aburatani, Hiroyuki ; Nakao, Mitsuyoshi ; Imamoto, Naoko ; Maeshima, Kazuhiro ; Shirahige, Katsuhiko ; Peters, Jan-Michael
Publisher:London: Nature Publishing Group UK
Journal title:Nature, 2008-02, Vol.451 (7180), p.796-801
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Small extracellular vesicles derived from interferon-γ pre-conditioned mesenchymal stromal cells effectively treat liver fibrosis
Author / Creator:Takeuchi, Suguru ; Tsuchiya, Atsunori ; Iwasawa, Takahiro ; Nojiri, Shunsuke ; Watanabe, Takayuki ; Ogawa, Masahiro ; Yoshida, Tomoaki ; Fujiki, Katsunori ; Koui, Yuta ; Kido, Taketomo ; Yoshioka, Yusuke ; Fujita, Mayu ; Kikuta, Junichi ; Itoh, Tohru ; Takamura, Masaaki ; Shirahige, Katsuhiko ; Ishii, Masaru ; Ochiya, Takahiro ; Miyajima, Atsushi ; Terai, Shuji
Publisher:London: Nature Publishing Group UK
Journal title:npj Regenerative medicine, 2021-03, Vol.6 (1), p.19-19, Article 19
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Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation

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The maintenance of chromosome structure: positioning and functioning of SMC complexes

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Mapping of histone-binding sites in histone replacement-completed spermatozoa

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Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity

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PHOSPHATE exporter XPR1/SLC53A1 is required for the tumorigenicity of epithelial ovarian cancer

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The HSF1–PARP13–PARP1 complex facilitates DNA repair and promotes mammary tumorigenesis

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Transcription-dependent cohesin repositioning rewires chromatin loops in cellular senescence

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The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory

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Large-scale multi-omics analysis suggests specific roles for intragenic cohesin in transcriptional regulation

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HSF1 phosphorylation establishes an active chromatin state via the TRRAP–TIP60 complex and promotes tumorigenesis

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Rif1 binds to G quadruplexes and suppresses replication over long distances

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Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation

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Pericentromeric noncoding RNA changes DNA binding of CTCF and inflammatory gene expression in senescence and cancer

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ASBEL–TCF3 complex is required for the tumorigenicity of colorectal cancer cells

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Chromosome-associated RNA–protein complexes promote pairing of homologous chromosomes during meiosis in Schizosaccharomyces pombe

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Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster

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Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms

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interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration

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Cohesin mediates transcriptional insulation by CCCTC-binding factor

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Small extracellular vesicles derived from interferon-γ pre-conditioned mesenchymal stromal cells effectively treat liver fibrosis

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