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ArticlesPeer ReviewedFull Text
A global genetic interaction network maps a wiring diagram of cellular function
Author / Creator:Costanzo, Michael ; VanderSluis, Benjamin ; Koch, Elizabeth N. ; Baryshnikova, Anastasia ; Pons, Carles ; Tan, Guihong ; Wang, Wen ; Usaj, Matej ; Hanchard, Julia ; Lee, Susan D. ; Pelechano, Vicent ; Styles, Erin B. ; Billmann, Maximilian ; van Leeuwen, Jolanda ; van Dyk, Nydia ; Lin, Zhen-Yuan ; Kuzmin, Elena ; Nelson, Justin ; Piotrowski, Jeff S. ; Srikumar, Tharan ; Bahr, Sondra ; Chen, Yiqun ; Deshpande, Raamesh ; Kurat, Christoph F. ; Li, Sheena C. ; Li, Zhijian ; Usaj, Mojca Mattiazzi ; Okada, Hiroki ; Pascoe, Natasha ; San Luis, Bryan-Joseph ; Sharifpoor, Sara ; Shuteriqi, Emira ; Simpkins, Scott W. ; Snider, Jamie ; Suresh, Harsha Garadi ; Tan, Yizhao ; Zhu, Hongwei ; Malod-Dognin, Noel ; Janjic, Vuk ; Przulj, Natasa ; Troyanskaya, Olga G. ; Stagljar, Igor ; Xia, Tian ; Ohya, Yoshikazu ; Gingras, Anne-Claude ; Raught, Brian ; Boutros, Michael ; Steinmetz, Lars M. ; Moore, Claire L. ; Rosebrock, Adam P. ; Caudy, Amy A. ; Myers, Chad L. ; Andrews, Brenda ; Boone, Charles
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2016-09, Vol.353 (6306), p.1381-1381
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ArticlesPeer ReviewedFull Text
Efficient proximity labeling in living cells and organisms with TurboID
Author / Creator:Branon, Tess C ; Bosch, Justin A ; Sanchez, Ariana D ; Udeshi, Namrata D ; Svinkina, Tanya ; Carr, Steven A ; Feldman, Jessica L ; Perrimon, Norbert ; Ting, Alice Y
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2018-10, Vol.36 (9), p.880-887
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ArticlesPeer ReviewedFull Text
Highly parallel direct RNA sequencing on an array of nanopores
Author / Creator:Garalde, Daniel R ; Snell, Elizabeth A ; Jachimowicz, Daniel ; Sipos, Botond ; Lloyd, Joseph H ; Bruce, Mark ; Pantic, Nadia ; Admassu, Tigist ; James, Phillip ; Warland, Anthony ; Jordan, Michael ; Ciccone, Jonah ; Serra, Sabrina ; Keenan, Jemma ; Martin, Samuel ; McNeill, Luke ; Wallace, E Jayne ; Jayasinghe, Lakmal ; Wright, Chris ; Blasco, Javier ; Young, Stephen ; Brocklebank, Denise ; Juul, Sissel ; Clarke, James ; Heron, Andrew J ; Turner, Daniel J
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2018-03, Vol.15 (3), p.201-206
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ArticlesPeer ReviewedFull Text
Systematic analysis of complex genetic interactions
Author / Creator:Kuzmin, Elena ; VanderSluis, Benjamin ; Wang, Wen ; Tan, Guihong ; Deshpande, Raamesh ; Chen, Yiqun ; Usaj, Matej ; Balint, Attila ; Mattiazzi Usaj, Mojca ; van Leeuwen, Jolanda ; Koch, Elizabeth N ; Pons, Carles ; Dagilis, Andrius J ; Pryszlak, Michael ; Wang, Jason Zi Yang ; Hanchard, Julia ; Riggi, Margot ; Xu, Kaicong ; Heydari, Hamed ; San Luis, Bryan-Joseph ; Shuteriqi, Ermira ; Zhu, Hongwei ; Van Dyk, Nydia ; Sharifpoor, Sara ; Costanzo, Michael ; Loewith, Robbie ; Caudy, Amy ; Bolnick, Daniel ; Brown, Grant W ; Andrews, Brenda J ; Boone, Charles ; Myers, Chad L
Publisher:United States: The American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2018-04, Vol.360 (6386)
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ArticlesPeer ReviewedFull Text
Synonymous mutations in representative yeast genes are mostly strongly non-neutral
Author / Creator:Shen, Xukang ; Song, Siliang ; Li, Chuan ; Zhang, Jianzhi
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2022-06, Vol.606 (7915), p.725-731
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ArticlesPeer ReviewedFull Text
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
Author / Creator:Kulak, Nils A ; Pichler, Garwin ; Paron, Igor ; Nagaraj, Nagarjuna ; Mann, Matthias
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2014-03, Vol.11 (3), p.319-324
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Synthetic biology strategies for microbial biosynthesis of plant natural products
Author / Creator:Cravens, Aaron ; Payne, James ; Smolke, Christina D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-05, Vol.10 (1), p.2142-2142, Article 2142
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ArticlesPeer ReviewedFull Text
RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome
Author / Creator:Van Treeck, Briana ; Protter, David S. W. ; Matheny, Tyler ; Khong, Anthony ; Link, Christopher D. ; Parker, Roy
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-03, Vol.115 (11), p.2734-2739
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ArticlesPeer ReviewedFull Text
Dimensionality reduction by UMAP to visualize physical and genetic interactions
Author / Creator:Dorrity, Michael W. ; Saunders, Lauren M. ; Queitsch, Christine ; Fields, Stanley ; Trapnell, Cole
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-03, Vol.11 (1), p.1537-1537, Article 1537
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ArticlesPeer ReviewedFull Text
Endocytic proteins with prion-like domains form viscoelastic condensates that enable membrane remodeling
Author / Creator:Bergeron-Sandoval, Louis-Philippe ; Kumar, Sandeep ; Heris, Hossein Khadivi ; Chang, Catherine L. A. ; Cornell, Caitlin E. ; Keller, Sarah L. ; François, Paul ; Hendricks, Adam G. ; Ehrlicher, Allen J. ; Pappu, Rohit V. ; Michnick, Stephen W.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2021-12, Vol.118 (50), p.1-12
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ArticlesPeer ReviewedFull Text
Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome
Author / Creator:Shi, Yuan ; Chen, Xiang ; Elsasser, Suzanne ; Stocks, Bradley B. ; Tian, Geng ; Lee, Byung-Hoon ; Shi, Yanhong ; Zhang, Naixia ; de Poot, Stefanie A. H. ; Tuebing, Fabian ; Sun, Shuangwu ; Vannoy, Jacob ; Tarasov, Sergey G. ; Engen, John R. ; Finley, Daniel ; Walters, Kylie J.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2016-02, Vol.351 (6275), p.831-831
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ArticlesPeer ReviewedFull Text
Redox-based reagents for chemoselective methionine bioconjugation
Author / Creator:Lin, Shixian ; Yang, Xiaoyu ; Jia, Shang ; Weeks, Amy M. ; Hornsby, Michael ; Lee, Peter S. ; Nichiporuk, Rita V. ; Iavarone, Anthony T. ; Wells, James A. ; Toste, F. Dean ; Chang, Christopher J.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2017-02, Vol.355 (6325), p.597-602
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ArticlesPeer ReviewedFull Text
The Atg2-Atg18 complex tethers pre-autophagosomal membranes to the endoplasmic reticulum for autophagosome formation
Author / Creator:Kotani, Tetsuya ; Kirisako, Hiromi ; Koizumi, Michiko ; Ohsumi, Yoshinori ; Nakatogawa, Hitoshi
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-10, Vol.115 (41), p.10363-10368
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ArticlesPeer ReviewedFull Text
Ribosome biogenesis in the yeast Saccharomyces cerevisiae
Author / Creator:Woolford, Jr, John L ; Baserga, Susan J
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2013-11, Vol.195 (3), p.643-681
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ArticlesPeer ReviewedFull Text
SLC25A51 is a mammalian mitochondrial NAD+ transporter
Author / Creator:Luongo, Timothy S. ; Eller, Jared M. ; Lu, Mu-Jie ; Niere, Marc ; Raith, Fabio ; Perry, Caroline ; Bornstein, Marc R. ; Oliphint, Paul ; Wang, Lin ; McReynolds, Melanie R. ; Migaud, Marie E. ; Rabinowitz, Joshua D. ; Johnson, F. Brad ; Johnsson, Kai ; Ziegler, Mathias ; Cambronne, Xiaolu A. ; Baur, Joseph A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-12, Vol.588 (7836), p.174-179
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ArticlesPeer ReviewedFull Text
Transforming yeast peroxisomes into microfactories for the efficient production of high-value isoprenoids
Author / Creator:Dusséaux, Simon ; Wajn, William Thomas ; Liu, Yixuan ; Ignea, Codruta ; Kampranis, Sotirios C.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2020-12, Vol.117 (50), p.31789-31799
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ArticlesPeer ReviewedFull Text
Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion
Author / Creator:Matoba, Kazuaki ; Kotani, Tetsuya ; Tsutsumi, Akihisa ; Tsuji, Takuma ; Mori, Takaharu ; Noshiro, Daisuke ; Sugita, Yuji ; Nomura, Norimichi ; Iwata, So ; Ohsumi, Yoshinori ; Fujimoto, Toyoshi ; Nakatogawa, Hitoshi ; Kikkawa, Masahide ; Noda, Nobuo N.
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2020-12, Vol.27 (12), p.1185-1193
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ArticlesPeer ReviewedFull Text
Phase separation organizes the site of autophagosome formation
Author / Creator:Fujioka, Yuko ; Alam, Jahangir Md ; Noshiro, Daisuke ; Mouri, Kazunari ; Ando, Toshio ; Okada, Yasushi ; May, Alexander I. ; Knorr, Roland L. ; Suzuki, Kuninori ; Ohsumi, Yoshinori ; Noda, Nobuo N.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-02, Vol.578 (7794), p.301-305
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ArticlesPeer ReviewedFull Text
An improved MS2 system for accurate reporting of the mRNA life cycle
Author / Creator:Tutucci, Evelina ; Vera, Maria ; Biswas, Jeetayu ; Garcia, Jennifer ; Parker, Roy ; Singer, Robert H
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2018-01, Vol.15 (1), p.81-89
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ArticlesPeer ReviewedFull Text
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
Author / Creator:Beckmann, Benedikt M. ; Horos, Rastislav ; Fischer, Bernd ; Castello, Alfredo ; Eichelbaum, Katrin ; Alleaume, Anne-Marie ; Schwarzl, Thomas ; Curk, Tomaž ; Foehr, Sophia ; Huber, Wolfgang ; Krijgsveld, Jeroen ; Hentze, Matthias W.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-12, Vol.6 (1), p.10127-10127, Article 10127
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A global genetic interaction network maps a wiring diagram of cellular function

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Efficient proximity labeling in living cells and organisms with TurboID

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Highly parallel direct RNA sequencing on an array of nanopores

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Systematic analysis of complex genetic interactions

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Synonymous mutations in representative yeast genes are mostly strongly non-neutral

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Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

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Synthetic biology strategies for microbial biosynthesis of plant natural products

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RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome

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Dimensionality reduction by UMAP to visualize physical and genetic interactions

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Endocytic proteins with prion-like domains form viscoelastic condensates that enable membrane remodeling

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Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome

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Redox-based reagents for chemoselective methionine bioconjugation

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The Atg2-Atg18 complex tethers pre-autophagosomal membranes to the endoplasmic reticulum for autophagosome formation

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Ribosome biogenesis in the yeast Saccharomyces cerevisiae

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SLC25A51 is a mammalian mitochondrial NAD+ transporter

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Transforming yeast peroxisomes into microfactories for the efficient production of high-value isoprenoids

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Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion

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Phase separation organizes the site of autophagosome formation

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An improved MS2 system for accurate reporting of the mRNA life cycle

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The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

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