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83 results for Chen,+Jiekai

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ArticlesPeer ReviewedFull Text
Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
Author / Creator:He, Jiangping ; Babarinde, Isaac A. ; Sun, Li ; Xu, Shuyang ; Chen, Ruhai ; Shi, Junjie ; Wei, Yuanjie ; Li, Yuhao ; Ma, Gang ; Zhuang, Qiang ; Hutchins, Andrew P. ; Chen, Jiekai
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-03, Vol.12 (1), p.1456-1456, Article 1456
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Systematic calibration of epitranscriptomic maps using a synthetic modification-free RNA library
Author / Creator:Zhang, Zhang ; Chen, Tao ; Chen, Hong-Xuan ; Xie, Ying-Yuan ; Chen, Li-Qian ; Zhao, Yu-Li ; Liu, Biao-Di ; Jin, Lingmei ; Zhang, Wutong ; Liu, Chang ; Ma, Dong-Zhao ; Chai, Guo-Shi ; Zhang, Ying ; Zhao, Wen-Shuo ; Ng, Wen Hui ; Chen, Jiekai ; Jia, Guifang ; Yang, Jianhua ; Luo, Guan-Zheng
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-10, Vol.18 (10), p.1213-1222
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scDIOR: single cell RNA-seq data IO software
Author / Creator:Feng, Huijian ; Lin, Lihui ; Chen, Jiekai
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2022-01, Vol.23 (1), p.16-16, Article 16
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Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection
Author / Creator:Pei, Rongjuan ; Feng, Jianqi ; Zhang, Yecheng ; Sun, Hao ; Li, Lian ; Yang, Xuejie ; He, Jiangping ; Xiao, Shuqi ; Xiong, Jin ; Lin, Ying ; Wen, Kun ; Zhou, Hongwei ; Chen, Jiekai ; Rong, Zhili ; Chen, Xinwen
Publisher:Beijing: Higher Education Press
Journal title:Protein & cell, 2021-09, Vol.12 (9), p.717-733
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Systematic comparison of tools used for m6A mapping from nanopore direct RNA sequencing
Author / Creator:Zhong, Zhen-Dong ; Xie, Ying-Yuan ; Chen, Hong-Xuan ; Lan, Ye-Lin ; Liu, Xue-Hong ; Ji, Jing-Yun ; Wu, Fu ; Jin, Lingmei ; Chen, Jiekai ; Mak, Daniel W. ; Zhang, Zhang ; Luo, Guan-Zheng
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-04, Vol.14 (1), p.1906-1906, Article 1906
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The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters
Author / Creator:Bao, Xichen ; Wu, Haitao ; Zhu, Xihua ; Guo, Xiangpeng ; Hutchins, Andrew P ; Luo, Zhiwei ; Song, Hong ; Chen, Yongqiang ; Lai, Keyu ; Yin, Menghui ; Xu, Lingxiao ; Zhou, Liang ; Chen, Jiekai ; Wang, Dongye ; Qin, Baoming ; Frampton, Jon ; Tse, Hung-Fat ; Pei, Duanqing ; Wang, Huating ; Zhang, Biliang ; Esteban, Miguel A
Publisher:London: Nature Publishing Group UK
Journal title:Cell research, 2015-01, Vol.25 (1), p.80-92
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SARS-CoV-2 envelope protein causes acute respiratory distress syndrome (ARDS)-like pathological damages and constitutes an antiviral target
Author / Creator:Xia, Bingqing ; Shen, Xurui ; He, Yang ; Pan, Xiaoyan ; Liu, Feng-Liang ; Wang, Yi ; Yang, Feipu ; Fang, Sui ; Wu, Yan ; Duan, Zilei ; Zuo, Xiaoli ; Xie, Zhuqing ; Jiang, Xiangrui ; Xu, Ling ; Chi, Hao ; Li, Shuangqu ; Meng, Qian ; Zhou, Hu ; Zhou, Yubo ; Cheng, Xi ; Xin, Xiaoming ; Jin, Lin ; Zhang, Hai-Lin ; Yu, Dan-Dan ; Li, Ming-Hua ; Feng, Xiao-Li ; Chen, Jiekai ; Jiang, Hualiang ; Xiao, Gengfu ; Zheng, Yong-Tang ; Zhang, Lei-Ke ; Shen, Jingshan ; Li, Jia ; Gao, Zhaobing
Publisher:Singapore: Springer Singapore
Journal title:Cell research, 2021-08, Vol.31 (8), p.847-860
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Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients
Author / Creator:He, Jiangping ; Cai, Shuijiang ; Feng, Huijian ; Cai, Baomei ; Lin, Lihui ; Mai, Yuanbang ; Fan, Yinqiang ; Zhu, Airu ; Huang, Huang ; Shi, Junjie ; Li, Dingxin ; Wei, Yuanjie ; Li, Yueping ; Zhao, Yingying ; Pan, Yuejun ; Liu, He ; Mo, Xiaoneng ; He, Xi ; Cao, Shangtao ; Hu, FengYu ; Zhao, Jincun ; Wang, Jie ; Zhong, Nanshan ; Chen, Xinwen ; Deng, Xilong ; Chen, Jiekai
Publisher:Beijing: Higher Education Press
Journal title:Protein & cell, 2020-09, Vol.11 (9), p.680-687
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Sequential introduction of reprogramming factors reveals a time-sensitive requirement for individual factors and a sequential EMT–MET mechanism for optimal reprogramming
Author / Creator:Liu, Xiaopeng ; Sun, Hao ; Qi, Jing ; Wang, Linli ; He, Songwei ; Liu, Jing ; Feng, Chengqian ; Chen, Chunlan ; Li, Wen ; Guo, Yunqian ; Qin, Dajiang ; Pan, Guangjin ; Chen, Jiekai ; Pei, Duanqing ; Zheng, Hui
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2013-07, Vol.15 (7), p.829-838
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Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells
Author / Creator:He, Jiangping ; Fu, Xiuling ; Zhang, Meng ; He, Fangfang ; Li, Wenjuan ; Abdul, Mazid Md ; Zhou, Jianguo ; Sun, Li ; Chang, Chen ; Li, Yuhao ; Liu, He ; Wu, Kaixin ; Babarinde, Isaac A. ; Zhuang, Qiang ; Loh, Yuin-Han ; Chen, Jiekai ; Esteban, Miguel A. ; Hutchins, Andrew P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-01, Vol.10 (1), p.34-13, Article 34
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SS18 regulates pluripotent-somatic transition through phase separation
Author / Creator:Kuang, Junqi ; Zhai, Ziwei ; Li, Pengli ; Shi, Ruona ; Guo, Wenjing ; Yao, Yuxiang ; Guo, Jing ; Zhao, Guoqing ; He, Jiangpin ; Xu, Shuyang ; Wu, Chuman ; Yu, Shengyong ; Zhou, Chunhua ; Wu, Linlin ; Qin, Yue ; Cai, Baomei ; Li, Wei ; Wu, Zichao ; Li, Xiaoxi ; Chu, Shilong ; Yang, Tingting ; Wang, Bo ; Cao, Shangtao ; Li, Dongwei ; Zhang, Xiaofei ; Chen, Jiekai ; Liu, Jing ; Pei, Duanqing
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-07, Vol.12 (1), p.4090-4090, Article 4090
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Loss of PHF8 induces a viral mimicry response by activating endogenous retrotransposons
Author / Creator:Liu, Yanan ; Hu, Longmiao ; Wu, Zhengzhen ; Yuan, Kun ; Hong, Guangliang ; Lian, Zhengke ; Feng, Juanjuan ; Li, Na ; Li, Dali ; Wong, Jiemin ; Chen, Jiekai ; Liu, Mingyao ; He, Jiangping ; Pang, Xiufeng
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-07, Vol.14 (1), p.4225-4225, Article 4225
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ArticlesPeer ReviewedFull Text
Premature aging effects on COVID-19 pathogenesis: new insights from mouse models
Author / Creator:Haoyu, Wu ; Meiqin, Liu ; Jiaoyang, Sun ; Guangliang, Hong ; Haofeng, Lin ; Pan, Chen ; Xiongzhi, Quan ; Kaixin, Wu ; Mingli, Hu ; Xuejie, Yang ; Lämmermann, Ingo ; Grillari, Johannes ; Zhengli, Shi ; Jiekai, Chen ; Guangming, Wu
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-08, Vol.14 (1), p.19703-11, Article 19703
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BMP4 drives primed to naïve transition through PGC-like state
Author / Creator:Yu, Shengyong ; Zhou, Chunhua ; He, Jiangping ; Yao, Zhaokai ; Huang, Xingnan ; Rong, Bowen ; Zhu, Hong ; Wang, Shijie ; Chen, Shuyan ; Wang, Xialian ; Cai, Baomei ; Zhao, Guoqing ; Chen, Yuhan ; Xiao, Lizhan ; Liu, He ; Qin, Yue ; Guo, Jing ; Wu, Haokaifeng ; Zhang, Zhen ; Zhang, Man ; Zhao, Xiaoyang ; Lan, Fei ; Wang, Yixuan ; Chen, Jiekai ; Cao, Shangtao ; Pei, Duanqing ; Liu, Jing
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-05, Vol.13 (1), p.2756-2756, Article 2756
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Practical bioinformatics pipelines for single-cell RNA-seq data analysis
Author / Creator:Jiangping, He ; Lihui, Lin ; Jiekai, Chen
Publisher:China: Institute of Biophysics
Journal title:Biophysics reports, 2022-06, Vol.8 (3), p.158-169
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METTL3/METTL14 maintain human nucleoli integrity by mediating SUV39H1/H2 degradation
Author / Creator:Shan, Yongli ; Zhang, Yanqi ; Wei, Yanxing ; Zhang, Cong ; Lin, Huaisong ; He, Jiangping ; Wang, Junwei ; Guo, Wenjing ; Li, Heying ; Chen, Qianyu ; Zhou, Tiancheng ; Xing, Qi ; Liu, Yancai ; Chen, Jiekai ; Pan, Guangjin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-08, Vol.15 (1), p.7186-13, Article 7186
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PRC2 specifies ectoderm lineages and maintains pluripotency in primed but not naïve ESCs
Author / Creator:Shan, Yongli ; Liang, Zechuan ; Xing, Qi ; Zhang, Tian ; Wang, Bo ; Tian, Shulan ; Huang, Wenhao ; Zhang, Yanqi ; Yao, Jiao ; Zhu, Yanling ; Huang, Ke ; Liu, Yujian ; Wang, Xiaoshan ; Chen, Qianyu ; Zhang, Jian ; Shang, Bizhi ; Li, Shengbiao ; Shi, Xi ; Liao, Baojian ; Zhang, Cong ; Lai, Keyu ; Zhong, Xiaofen ; Shu, Xiaodong ; Wang, Jinyong ; Yao, Hongjie ; Chen, Jiekai ; Pei, Duanqing ; Pan, Guangjin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-09, Vol.8 (1), p.672-14, Article 672
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The NuRD complex cooperates with SALL4 to orchestrate reprogramming
Author / Creator:Wang, Bo ; Li, Chen ; Ming, Jin ; Wu, Linlin ; Fang, Shicai ; Huang, Yi ; Lin, Lihui ; Liu, He ; Kuang, Junqi ; Zhao, Chengchen ; Huang, Xingnan ; Feng, Huijian ; Guo, Jing ; Yang, Xuejie ; Guo, Liman ; Zhang, Xiaofei ; Chen, Jiekai ; Liu, Jing ; Zhu, Ping ; Pei, Duanqing
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-05, Vol.14 (1), p.2846-2846, Article 2846
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Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2
Author / Creator:Malik, Vikas ; Glaser, Laura V. ; Zimmer, Dennis ; Velychko, Sergiy ; Weng, Mingxi ; Holzner, Markus ; Arend, Marius ; Chen, Yanpu ; Srivastava, Yogesh ; Veerapandian, Veeramohan ; Shah, Zahir ; Esteban, Miguel A. ; Wang, Huating ; Chen, Jiekai ; Schöler, Hans R. ; Hutchins, Andrew P. ; Meijsing, Sebastiaan H. ; Pott, Sebastian ; Jauch, Ralf
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-08, Vol.10 (1), p.3477-16, Article 3477
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BMP4 resets mouse epiblast stem cells to naive pluripotency through ZBTB7A/B-mediated chromatin remodelling
Author / Creator:Yu, Shengyong ; Zhou, Chunhua ; Cao, Shangtao ; He, Jiangping ; Cai, Baomei ; Wu, Kaixin ; Qin, Yue ; Huang, Xingnan ; Xiao, Lizhan ; Ye, Jing ; Xu, Shuyang ; Xie, Wenxiu ; Kuang, Junqi ; Chu, Shilong ; Guo, Jing ; Liu, He ; Pang, Wei ; Guo, Lin ; Zeng, Mengying ; Wang, Xiaoshan ; Luo, Rongping ; Li, Chen ; Zhao, Guoqing ; Wang, Bo ; Wu, Linlin ; Chen, Jiekai ; Liu, Jing ; Pei, Duanqing
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2020-06, Vol.22 (6), p.651-662
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Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

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Systematic calibration of epitranscriptomic maps using a synthetic modification-free RNA library

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scDIOR: single cell RNA-seq data IO software

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Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection

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Systematic comparison of tools used for m6A mapping from nanopore direct RNA sequencing

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The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters

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SARS-CoV-2 envelope protein causes acute respiratory distress syndrome (ARDS)-like pathological damages and constitutes an antiviral target

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Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients

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Sequential introduction of reprogramming factors reveals a time-sensitive requirement for individual factors and a sequential EMT–MET mechanism for optimal reprogramming

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Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells

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SS18 regulates pluripotent-somatic transition through phase separation

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Loss of PHF8 induces a viral mimicry response by activating endogenous retrotransposons

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Premature aging effects on COVID-19 pathogenesis: new insights from mouse models

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BMP4 drives primed to naïve transition through PGC-like state

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Practical bioinformatics pipelines for single-cell RNA-seq data analysis

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METTL3/METTL14 maintain human nucleoli integrity by mediating SUV39H1/H2 degradation

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PRC2 specifies ectoderm lineages and maintains pluripotency in primed but not naïve ESCs

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The NuRD complex cooperates with SALL4 to orchestrate reprogramming

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Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2

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BMP4 resets mouse epiblast stem cells to naive pluripotency through ZBTB7A/B-mediated chromatin remodelling

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